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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400000553
PGSC0003DMT400008587
PGSC0003DMT400008605
PGSC0003DMT400012864
PGSC0003DMT400013977
PGSC0003DMT400014932
PGSC0003DMT400031769
PGSC0003DMT400032096
PGSC0003DMT400046382
PGSC0003DMT400055203
PGSC0003DMT400055753
PGSC0003DMT400084228

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11280.1 PGSC0003DMT400008587 AT2G22810.1 14983000
AT4G11280.1 PGSC0003DMT400008605 AT2G22810.1 14983000
AT4G11280.1 PGSC0003DMT400013977 AT2G22810.1 14983000
AT4G11280.1 PGSC0003DMT400055203 AT2G22810.1 14983000
AT4G11280.1 PGSC0003DMT400000553 AT3G61510.1 14983000
AT4G11280.1 PGSC0003DMT400055753 AT3G61510.1 14983000
AT4G11280.1 PGSC0003DMT400084228 AT3G61510.1 14983000
AT4G11280.1 PGSC0003DMT400012864 AT4G11280.1 14983000
AT4G11280.1 PGSC0003DMT400014932 AT4G11280.1 14983000
AT4G11280.1 PGSC0003DMT400031769 AT4G11280.1 14983000
AT4G11280.1 PGSC0003DMT400032096 AT4G11280.1 14983000
AT4G11280.1 PGSC0003DMT400046382 AT4G26080.1 19705149
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc08g008100.2.1 Tomato nucleus 66.05 87.95
PGSC0003DMT400032096 Potato cytosol 80.04 80.37
PGSC0003DMT400031769 Potato cytosol 78.81 78.97
VIT_02s0025g00360.t01 Wine grape cytosol 70.58 71.31
PGSC0003DMT400012864 Potato cytosol 70.37 70.52
PGSC0003DMT400092723 Potato cytosol 16.87 70.09
KRH27892 Soybean cytosol 67.49 68.33
KRH41241 Soybean cytosol 67.7 67.98
KRH59970 Soybean cytosol 67.28 67.56
PGSC0003DMT400000553 Potato cytosol 64.81 64.81
GSMUA_AchrUn_... Banana cytosol 59.05 64.79
AT4G11280.1 Thale cress cytosol 65.43 64.24
CDY13251 Canola cytosol 64.2 63.54
Bra035236.1-P Field mustard cytosol 63.58 63.32
CDX86796 Canola cytosol 63.58 63.32
GSMUA_Achr4P29150_001 Banana cytosol 62.76 62.76
GSMUA_Achr4P24930_001 Banana cytosol 61.11 61.75
Zm00001d002592_P002 Maize cytosol 58.64 58.76
Os04t0578000-01 Rice cytosol 57.82 58.18
EES12700 Sorghum cytosol 58.64 58.04
TraesCS2A01G396400.1 Wheat cytosol 57.82 57.82
TraesCS2D01G394200.1 Wheat cytosol 57.61 57.61
TraesCS2B01G414800.1 Wheat cytosol 57.61 57.61
PGSC0003DMT400043903 Potato cytosol 51.85 57.14
PGSC0003DMT400084228 Potato cytosol 20.58 57.14
PGSC0003DMT400000771 Potato cytosol 50.82 56.91
Zm00001d026060_P003 Maize cytosol 58.23 55.49
PGSC0003DMT400055753 Potato vacuole 41.15 52.63
PGSC0003DMT400008587 Potato cytosol 48.56 51.19
PGSC0003DMT400008605 Potato cytosol 44.24 50.83
PGSC0003DMT400055203 Potato cytosol 47.94 49.68
PGSC0003DMT400013977 Potato cytosol 37.24 48.53
PGSC0003DMT400012600 Potato cytosol 45.88 47.75
HORVU2Hr1G094230.2 Barley cytosol 44.44 44.63
PGSC0003DMT400079664 Potato golgi, mitochondrion, plastid 38.89 37.5
PGSC0003DMT400010000 Potato plastid 39.09 34.55
PGSC0003DMT400047918 Potato cytosol 19.75 19.96
PGSC0003DMT400012549 Potato cytosol, mitochondrion 19.34 19.3
PGSC0003DMT400042202 Potato cytosol, mitochondrion, peroxisome, plastid 2.06 11.76
Protein Annotations
MapMan:11.5.1.1Gene3D:3.40.640.10Gene3D:3.90.1150.10ProteinID:AAB96880ProteinID:AAB96880.1EMBL:AB041521
InterPro:Aminotransferase_I/IIProteinID:BAB16433ProteinID:BAB16433.1ncoils:CoilGO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016829
GO:GO:0016847GO:GO:0030170GO:GO:0042218InterPro:IPR015421InterPro:IPR015422UniProt:M1A546
InterPro:NHTrfase_class1_PyrdxlP-BSPFAM:PF00155EnsemblPlantsGene:PGSC0003DMG400005825PGSC:PGSC0003DMG400005825EnsemblPlants:PGSC0003DMT400014932PRINTS:PR00753
ScanProsite:PS00105PANTHER:PTHR43795PANTHER:PTHR43795:SF6InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383EMBL:U70842UniParc:UPI000295FB3ESEG:seg::
Description
ACC synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400005825]
Coordinates
chr8:-:4910023..4913231
Molecular Weight (calculated)
55053.1 Da
IEP (calculated)
6.933
GRAVY (calculated)
-0.182
Length
486 amino acids
Sequence
(BLAST)
001: MGLISENYNK NLLSKIATND GHGENSAYFD GWKAYENDPF HPTQNPHGVI QMGLAENQLC FDLIQEWIVN NPKASICTYE GVQDFQDIAI FQDYHGLPEF
101: RKAVARFMEK VRGDRVTFDP ERIVMSGGAT GAHESLAFCL ADPGDAFLVP TPYYPGFDRD LRWRTGVQLF PVVCESYNNF KVTKEALEEA YKKAQESNIK
201: VKGLLINNPS NPLGTILDKE TLKDILRFIN DKNIHLVCDE IYAATAFSQP SFISISEVMN EVVGCNDDLV HIVYSLSKDL GFPGFRVGII YSYNDVVVNI
301: ARKMSSFGLV STQTQRLIAS MLSDTIFVEN FIAKSAMRLS QRHDLFTIGL GQVGITTLKS NAGLFIWMDL RRFLEKSTFD DELKLWHIII NKVKLNVSPG
401: CSFHCSEPGW FRVCFANMDD ATMQVALKRI RHFVYLQPSK GVEVATKKQY CRTRSKLEIS LSFRRLDDFM NSPHSPMSSP MVQARN
Best Arabidopsis Sequence Match ( AT4G11280.1 )
(BLAST)
001: MVAFATEKKQ DLNLLSKIAS GDGHGENSSY FDGWKAYEEN PFHPIDRPDG VIQMGLAENQ LCGDLMRKWV LKHPEASICT SEGVNQFSDI AIFQDYHGLP
101: EFRQAVAKFM EKTRNNKVKF DPDRIVMSGG ATGAHETVAF CLANPGDGFL VPTPYYPGFD RDLRWRTGVN LVPVTCHSSN GFKITVEALE AAYENARKSN
201: IPVKGLLVTN PSNPLGTTLD RECLKSLVNF TNDKGIHLIA DEIYAATTFG QSEFISVAEV IEEIEDCNRD LIHIVYSLSK DMGLPGLRVG IVYSYNDRVV
301: QIARKMSSFG LVSSQTQHLI AKMLSDEEFV DEFIRESKLR LAARHAEITT GLDGLGIGWL KAKAGLFLWM DLRNLLKTAT FDSETELWRV IVHQVKLNVS
401: PGGSFHCHEP GWFRVCFANM DHKTMETALE RIRVFTSQLE EETKPMAATT MMAKKKKKCW QSNLRLSFSD TRRFDDGFFS PHSPVPPSPL VRAQT
Arabidopsis Description
ACS61-aminocyclopropane-1-carboxylate synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAR0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.