Factsheet for PGSC0003DMT400092723

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084228	Potato	cytosol	40.17	26.86
PGSC0003DMT400031769	Potato	cytosol	100.0	24.12
PGSC0003DMT400032096	Potato	cytosol	87.18	21.07
PGSC0003DMT400014932	Potato	cytosol	70.09	16.87
PGSC0003DMT400012864	Potato	cytosol	56.41	13.61
PGSC0003DMT400000553	Potato	cytosol	55.56	13.37
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	8.55	11.76
PGSC0003DMT400013977	Potato	cytosol	35.04	10.99
PGSC0003DMT400008605	Potato	cytosol	35.9	9.93
PGSC0003DMT400000771	Potato	cytosol	35.9	9.68
PGSC0003DMT400012600	Potato	cytosol	38.46	9.64
PGSC0003DMT400043903	Potato	cytosol	35.9	9.52
GSMUA_Achr4P30870_001	Banana	cytosol	34.19	9.48
Os05t0196600-00	Rice	cytosol	35.9	9.29
PGSC0003DMT400008587	Potato	cytosol	35.9	9.11
GSMUA_Achr10P...	Banana	cytosol	34.19	9.09
PGSC0003DMT400055203	Potato	cytosol	31.62	7.89
PGSC0003DMT400010000	Potato	plastid	24.79	5.27
PGSC0003DMT400079664	Potato	golgi, mitochondrion, plastid	22.22	5.16
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	12.82	3.08
PGSC0003DMT400047918	Potato	cytosol	7.69	1.87
PGSC0003DMT400055753	Potato	vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400092723	EnsemblPlantsGene:PGSC0003DMG400042294	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:Aminotransferase_I/II	InterPro:IPR015422
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	PANTHER:PTHR43795	PANTHER:PTHR43795:SF6	PFAM:PF00155	PGSC:PGSC0003DMG400042294
SUPFAM:SSF53383	UniParc:UPI0002956575	UniProt:M1DQE6	MapMan:35.1	:	:

Description

1-aminocyclopropane-1-carboxylate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400042294]

Coordinates

chr8:+:55234969..55235322

Molecular Weight (calculated)

13630.7 Da

IEP (calculated)

9.902

GRAVY (calculated)

-0.362

Length

117 amino acids

Sequence
(BLAST)

001: MDLRRLLKEA TFDGELELWR MIINEVKLNV SPGCSFHCSE PGWFRVCFAN MDDETMRIAL KRISYFVLQP KGLNNKAAVN KQCSRRKLQI SLSFRRLDHE
101: FMNSPAHSPM NSPLVRT

Best Arabidopsis Sequence Match ( AT3G61510.1 )
(BLAST)

001: MSQGACENQL LSKLALSDKH GEASPYFHGW KAYDNNPFHP THNPQGVIQM GLAENQLCSD LIKEWIKENP QASICTAEGI DSFSDIAVFQ DYHGLKQFRQ
101: AIATFMERAR GGRVRFEAER VVMSGGATGA NETIMFCLAD PGDAFLVPTP YYAAFDRDLR WRTGVRIIPV ECSSSNNFQI TKQALESAYL KAQETGIKIK
201: GLIISNPLGT SLDRETLESL VSFINDKQIH LVCDEIYAAT VFAEPGFISV AEIIQEMYYV NRDLIHIVYS LSKDMGLPGF RVGVVYSYND VVVSCARRMS
301: SFGLVSSQTQ SFLAAMLSDQ SFVDNFLVEV SKRVAKRHHM FTEGLEEMGI SCLRSNAGLF VLMDLRHMLK DQTFDSEMAL WRVIINKVKI NVSPGSSFHC
401: SEPGWFRVCF ANMDEDTLQI ALERIKDFVV GDRANKNKNC NCICNNKREN KKRKSFQKNL KLSLSSMRYE EHVRSPKLMS PHSPLLRA

Arabidopsis Description

ACS11-aminocyclopropane-1-carboxylate synthase-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06429]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.