Factsheet for PGSC0003DMT400084228

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000553
PGSC0003DMT400012864
PGSC0003DMT400014932
PGSC0003DMT400031769
PGSC0003DMT400032096
PGSC0003DMT400055753
PGSC0003DMT400084228

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61510.1	PGSC0003DMT400000553	AT3G61510.1	14983000
AT3G61510.1	PGSC0003DMT400055753	AT3G61510.1	14983000
AT3G61510.1	PGSC0003DMT400084228	AT3G61510.1	14983000
AT3G61510.1	PGSC0003DMT400012864	AT4G11280.1	14983000
AT3G61510.1	PGSC0003DMT400014932	AT4G11280.1	14983000
AT3G61510.1	PGSC0003DMT400031769	AT4G11280.1	14983000
AT3G61510.1	PGSC0003DMT400032096	AT4G11280.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092723	Potato	cytosol	26.86	40.17
Solyc05g050010.2.1	Tomato	cytosol	76.0	27.94
VIT_15s0046g02220.t01	Wine grape	cytosol	60.57	24.2
PGSC0003DMT400013977	Potato	cytosol	49.71	23.32
PGSC0003DMT400000553	Potato	cytosol	64.0	23.05
GSMUA_AchrUn_...	Banana	cytosol	57.71	22.8
PGSC0003DMT400031769	Potato	cytosol	61.14	22.06
KRH06585	Soybean	cytosol	59.43	21.94
KRH48058	Soybean	cytosol	59.43	21.94
PGSC0003DMT400032096	Potato	cytosol	60.0	21.69
GSMUA_Achr4P24930_001	Banana	cytosol	59.43	21.62
PGSC0003DMT400012864	Potato	cytosol	59.43	21.44
PGSC0003DMT400008605	Potato	cytosol	51.43	21.28
KRH00855	Soybean	cytosol	58.29	21.25
KRH40379	Soybean	cytosol	58.29	21.03
AT3G61510.1	Thale cress	cytosol	58.29	20.9
GSMUA_Achr4P29150_001	Banana	cytosol	57.71	20.78
PGSC0003DMT400014932	Potato	cytosol	57.14	20.58
CDY65356	Canola	cytosol	55.43	20.51
CDY11360	Canola	cytosol	54.86	20.3
Bra007611.1-P	Field mustard	cytosol	54.86	20.3
PGSC0003DMT400000771	Potato	cytosol	49.71	20.05
EES12700	Sorghum	cytosol	56.0	19.96
TraesCS2D01G394200.1	Wheat	cytosol	55.43	19.96
TraesCS2B01G414800.1	Wheat	cytosol	55.43	19.96
TraesCS2A01G396400.1	Wheat	cytosol	55.43	19.96
Os04t0578000-01	Rice	cytosol	54.86	19.88
Zm00001d002592_P002	Maize	cytosol	54.86	19.79
PGSC0003DMT400043903	Potato	cytosol	49.71	19.73
PGSC0003DMT400008587	Potato	cytosol	50.86	19.31
Zm00001d026060_P003	Maize	cytosol	54.86	18.82
PGSC0003DMT400055203	Potato	cytosol	49.14	18.34
PGSC0003DMT400012600	Potato	cytosol	48.0	17.99
PGSC0003DMT400055753	Potato	vacuole	37.14	17.11
PGSC0003DMT400079664	Potato	golgi, mitochondrion, plastid	36.0	12.5
PGSC0003DMT400010000	Potato	plastid	37.14	11.82
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	5.71	11.76
HORVU2Hr1G094230.2	Barley	cytosol	28.57	10.33
KRH65284	Soybean	cytosol	5.14	7.32
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	19.43	6.98
PGSC0003DMT400047918	Potato	cytosol	14.86	5.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400084228	EnsemblPlantsGene:PGSC0003DMG400033885	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:Aminotransferase_I/II	InterPro:IPR015422
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	PANTHER:PTHR43795	PANTHER:PTHR43795:SF25	PFAM:PF00155	PGSC:PGSC0003DMG400033885
SUPFAM:SSF53383	UniParc:UPI00029500BE	UniProt:M1D7L9	MapMan:50.4.4	:	:

Description

1-aminocyclopropane-1-carboxylate synthase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400033885]

Coordinates

chr5:+:44165582..44166521

Molecular Weight (calculated)

19761.7 Da

IEP (calculated)

8.321

GRAVY (calculated)

-0.190

Length

175 amino acids

Sequence
(BLAST)

001: MGFPGFRVGI VYSFNDDVVN NARKMSSFGL VSTQTQNFLA SMLSDDEFIE EFLTENTKRL RKRHEKFTSG LEKIGIRCLK SNAGVYCWVD LRTLLKEPTL
101: DAEVSLWKLI INNAKLNISP GSSFNCPEAG WFRICFANID DRTVEIALKR IQIFVDANND INENGIVKNA SVKGK

Best Arabidopsis Sequence Match ( AT1G01480.1 )
(BLAST)

001: MGLPGKNKGA VLSKIATNNQ HGENSEYFDG WKAYDKDPFH LSRNPHGIIQ MGLAENQLCL DLIKDWVKEN PEASICTLEG IHQFSDIANF QDYHGLKKFR
101: QAIAHFMGKA RGGRVTFDPE RVVMSGGATG ANETIMFCLA DPGDVFLIPS PYYAAFDRDL RWRTGVEIIP VPCSSSDNFK LTVDAAEWAY KKAQESNKKV
201: KGLILTNPSN PLGTMLDKDT LTNLVRFVTR KNIHLVVDEI YAATVFAGGD FVSVAEVVND VDISEVNVDL IHIVYSLSKD MGLPGFRVGI VYSFNDSVVS
301: CARKMSSFGL VSSQTQLMLA SMLSDDQFVD NFLMESSRRL GIRHKVFTTG IKKADIACLT SNAGLFAWMD LRHLLRDRNS FESEIELWHI IIDRVKLNVS
401: PGSSFRCTEP GWFRICFANM DDDTLHVALG RIQDFVSKNK NKIVEKASEN DQVIQNKSAK KLKWTQTNLR LSFRRLYEDG LSSPGIMSPH SPLLRA

Arabidopsis Description

ACS21-aminocyclopropane-1-carboxylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q06402]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.