Factsheet for PGSC0003DMT400047918

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 3
plastid 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	99.17	99.17
CDY25781	Canola	cytosol	11.02	91.38
VIT_00s0225g00130.t01	Wine grape	cytosol	88.77	88.77
GSMUA_Achr6P29540_001	Banana	cytosol	87.11	87.11
CDY61225	Canola	peroxisome	86.69	86.69
Bra016202.1-P	Field mustard	cytosol	86.69	86.51
AT1G70580.1	Thale cress	cytosol, nucleus, peroxisome	86.07	86.07
CDY66294	Canola	cytosol	85.86	85.86
Bra016353.1-P	Field mustard	cytosol	85.24	85.77
Bra024580.1-P	Field mustard	cytosol	85.24	85.77
CDY04729	Canola	cytosol	85.24	85.77
CDY44130	Canola	cytosol	85.24	85.77
CDY41452	Canola	peroxisome	84.82	85.36
KRH69622	Soybean	cytosol	84.82	84.82
GSMUA_Achr8P15810_001	Banana	cytosol	84.82	84.82
Os07t0108300-01	Rice	extracellular, nucleus, plasma membrane	85.45	84.74
KRH74536	Soybean	cytosol	84.62	84.62
TraesCS2B01G280600.1	Wheat	plastid	84.2	84.55
TraesCS2A01G261600.1	Wheat	peroxisome	84.2	84.55
AT1G23310.1	Thale cress	cytosol	84.2	84.2
Bra012371.1-P	Field mustard	cytosol	79.63	83.99
CDX91708	Canola	peroxisome	70.27	83.87
KXG34265	Sorghum	cytosol	83.16	83.68
CDY25780	Canola	peroxisome	70.06	83.62
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	14.76	83.53
Zm00001d007937_P001	Maize	mitochondrion	82.12	82.46
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.04	80.92
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.04	80.92
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.04	80.92
HORVU2Hr1G063740.6	Barley	peroxisome, vacuole	80.46	79.63
TraesCS2D01G262400.2	Wheat	cytosol	78.59	75.75
CDY12474	Canola	peroxisome, plastid	80.67	72.25
Bra009959.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.63	52.62
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	49.27	48.67
CDX86161	Canola	cytosol	7.28	26.52
PGSC0003DMT400043903	Potato	cytosol	19.96	21.77
PGSC0003DMT400000771	Potato	cytosol	19.33	21.43
PGSC0003DMT400055753	Potato	vacuole	16.42	20.79
PGSC0003DMT400000553	Potato	cytosol	20.37	20.16
PGSC0003DMT400014932	Potato	cytosol	19.96	19.75
PGSC0003DMT400032096	Potato	cytosol	19.75	19.63
PGSC0003DMT400012864	Potato	cytosol	19.75	19.59
PGSC0003DMT400031769	Potato	cytosol	19.54	19.38
PGSC0003DMT400013977	Potato	cytosol	14.97	19.3
PGSC0003DMT400055203	Potato	cytosol	18.71	19.19
PGSC0003DMT400012600	Potato	cytosol	18.09	18.63
PGSC0003DMT400008605	Potato	cytosol	16.22	18.44
PGSC0003DMT400008587	Potato	cytosol	17.67	18.44
PGSC0003DMT400079664	Potato	golgi, mitochondrion, plastid	18.71	17.86
PGSC0003DMT400010000	Potato	plastid	17.88	15.64
PGSC0003DMT400084228	Potato	cytosol	5.41	14.86
PGSC0003DMT400092723	Potato	cytosol	1.87	7.69

Protein Annotations

MapMan:1.3.3.1	EntrezGene:102586190	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170
InterPro:IPR015421	InterPro:IPR015422	UniProt:M1BLM4	PFAM:PF00155	EnsemblPlantsGene:PGSC0003DMG400018622	PGSC:PGSC0003DMG400018622
EnsemblPlants:PGSC0003DMT400047918	PANTHER:PTHR11751	PANTHER:PTHR11751:SF373	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	UniParc:UPI0002968B32	RefSeq:XP_006357614.1	:	:	:

Description

AlaT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400018622]

Coordinates

chr5:+:10028440..10036840

Molecular Weight (calculated)

53482.6 Da

IEP (calculated)

7.064

GRAVY (calculated)

-0.206

Length

481 amino acids

Sequence
(BLAST)

001: MSSKALDYEN LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVIALCQAPF LLDDPNVGLI FPADAIARAK QFLGMTSGGL
101: GAYSDSRGIP GVRKEVAEFI ERRDGYPSDP ELIFLTDGAS KGVMQILNSI IRGPSDGILV PVPQYPLYSA SIQLLGGSLV PYYLEETANW GLDINDLRQS
201: VAQARYKGIT VRAMVIINPG NPTGQCLSVA NLKQIIQFCH QENLVLLGDE VYQQNIYQDE RPFISARKVL LDMGLPLSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNIP PKAVEEIYKV ASISLSPNVP GQIFMGLMVN PPKPGDISYD QYVRESKGIL ESLRRRAHMM TDGFNSCRNV VCNFTEGAMY SFPQIRLPPR
401: AIETANKLGK AADVFYCLRL LEATGISTVP GSGFGQKEGV FHLRTTILPA EEDMPAIMES FKKFNDEFME KYEDHKGYSR M

Best Arabidopsis Sequence Match ( AT1G70580.4 )
(BLAST)

001: MSLKALDYES LNENVKNCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVSLCQAPF LLDDPNVGMI FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI ERRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGQKDGILV PVPQYPLYSA TISLLGGTLV PYYLEESENW GLDVNNLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILRFCC DERLVLLGDE VYQQNIYQDE RPFISSKKVL MDMGAPISKE VQLISFHTVS KGYWGECGQR
301: GGYFEMTNIP PRTVEEIYKV ASIALSPNVS AQIFMGLMVS PPKPGDISYD QFVRESKGIL ESLRRRARMM TDGFNSCKNV VCNFTEGAMY SFPQIKLPSK
401: AIQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EEEMPEIMDS FKKFNDEFMS QYADNFGYSR M

Arabidopsis Description

GGAT2Glutamate--glyoxylate aminotransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7E9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.