Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23310.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT1G23310.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016353.1-P | Field mustard | cytosol | 99.58 | 99.58 |
| CDX91708 | Canola | peroxisome | 83.89 | 99.5 |
| CDY04729 | Canola | cytosol | 97.07 | 97.07 |
| CDY44130 | Canola | cytosol | 97.07 | 97.07 |
| CDY25780 | Canola | peroxisome | 81.59 | 96.77 |
| AT1G23310.1 | Thale cress | cytosol | 95.82 | 95.22 |
| CDY25781 | Canola | cytosol | 11.3 | 93.1 |
| CDY61225 | Canola | peroxisome | 92.68 | 92.1 |
| CDY66294 | Canola | cytosol | 91.84 | 91.27 |
| CDX86159 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 24.9 | 90.84 |
| CDX88411 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 24.9 | 90.84 |
| CDX91589 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 24.9 | 90.84 |
| PGSC0003DMT400042202 | Potato | cytosol, mitochondrion, peroxisome, plastid | 15.48 | 87.06 |
| VIT_00s0225g00130.t01 | Wine grape | cytosol | 87.45 | 86.9 |
| KRH69622 | Soybean | cytosol | 85.77 | 85.24 |
| PGSC0003DMT400047918 | Potato | cytosol | 85.36 | 84.82 |
| KRH74536 | Soybean | cytosol | 85.36 | 84.82 |
| Solyc05g013380.2.1 | Tomato | extracellular, nucleus, plastid | 85.15 | 84.62 |
| Solyc01g007940.2.1 | Tomato | cytosol | 83.68 | 84.57 |
| GSMUA_Achr6P29540_001 | Banana | cytosol | 84.94 | 84.41 |
| GSMUA_Achr8P15810_001 | Banana | cytosol | 84.1 | 83.58 |
| Os07t0108300-01 | Rice | extracellular, nucleus, plasma membrane | 84.31 | 83.09 |
| TraesCS2A01G261600.1 | Wheat | peroxisome | 83.05 | 82.88 |
| TraesCS2B01G280600.1 | Wheat | plastid | 83.05 | 82.88 |
| CDY12474 | Canola | peroxisome, plastid | 93.1 | 82.87 |
| KXG34265 | Sorghum | cytosol | 80.75 | 80.75 |
| Zm00001d007937_P001 | Maize | mitochondrion | 79.71 | 79.54 |
| HORVU2Hr1G063740.6 | Barley | peroxisome, vacuole | 80.54 | 79.22 |
| TraesCS2D01G262400.2 | Wheat | cytosol | 77.82 | 74.55 |
| CDY03822 | Canola | cytosol | 12.55 | 46.51 |
| CDX68271 | Canola | mitochondrion | 12.13 | 45.31 |
| CDX83914 | Canola | mitochondrion | 51.26 | 45.29 |
| CDY26256 | Canola | mitochondrion | 50.84 | 45.25 |
| CDX96776 | Canola | mitochondrion | 51.26 | 45.2 |
| CDY48485 | Canola | plastid | 50.63 | 44.81 |
| CDY21752 | Canola | mitochondrion | 50.84 | 44.42 |
| CDX81815 | Canola | mitochondrion | 50.84 | 44.26 |
| CDY50645 | Canola | cytosol | 17.15 | 37.96 |
| CDX83913 | Canola | cytosol, nucleus, peroxisome | 9.21 | 34.38 |
| CDX68272 | Canola | nucleus | 7.11 | 30.63 |
| CDX86161 | Canola | cytosol | 6.07 | 21.97 |
| CDY71142 | Canola | cytosol | 20.29 | 21.65 |
| CDX94359 | Canola | cytosol | 20.08 | 21.43 |
| CDX92755 | Canola | cytosol | 18.62 | 21.39 |
| CDY42751 | Canola | cytosol | 20.08 | 21.29 |
| CDX89355 | Canola | cytosol | 19.87 | 21.21 |
| CDY05953 | Canola | cytosol | 20.29 | 20.64 |
| CDY66472 | Canola | cytosol | 17.36 | 20.6 |
| CDY02111 | Canola | cytosol | 20.08 | 20.43 |
| CDY08163 | Canola | cytosol | 20.08 | 20.43 |
| CDY72652 | Canola | cytosol | 8.58 | 20.4 |
| CDX75675 | Canola | cytosol | 19.04 | 20.18 |
| CDY23035 | Canola | cytosol | 19.67 | 20.17 |
| CDX69326 | Canola | cytosol | 19.46 | 19.83 |
| CDX89520 | Canola | cytosol | 19.46 | 19.62 |
| CDY25639 | Canola | cytosol | 19.46 | 19.62 |
| CDY13251 | Canola | cytosol | 20.08 | 19.55 |
| CDX86796 | Canola | cytosol | 19.87 | 19.47 |
| CDY69462 | Canola | cytosol | 18.83 | 19.19 |
| CDY18674 | Canola | cytosol | 17.57 | 19.13 |
| CDX81296 | Canola | cytosol | 17.57 | 19.13 |
| CDY65356 | Canola | cytosol | 18.83 | 19.03 |
| CDY34015 | Canola | cytosol | 18.2 | 18.75 |
| CDX83146 | Canola | cytosol | 18.2 | 18.75 |
| CDY11360 | Canola | cytosol | 18.41 | 18.6 |
| CDX91604 | Canola | mitochondrion, plastid | 19.25 | 18.4 |
| CDY46931 | Canola | mitochondrion, plastid | 19.25 | 18.4 |
| CDX90035 | Canola | cytosol | 17.15 | 18.34 |
| CDY15174 | Canola | cytosol | 18.83 | 18.15 |
| CDY45965 | Canola | cytosol | 19.46 | 17.13 |
| CDY45474 | Canola | cytosol | 18.41 | 16.83 |
| CDY43579 | Canola | cytosol, mitochondrion, plastid | 6.07 | 15.1 |
Protein Annotations
| MapMan:1.3.3.1 | Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | GO:A0A078HUC7 | UniProt:A0A078HUC7 | InterPro:Aminotransferase_I/II |
| EnsemblPlants:CDY41452 | ProteinID:CDY41452 | ProteinID:CDY41452.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0030170 | EnsemblPlantsGene:GSBRNA2T00073054001 | InterPro:IPR015421 |
| InterPro:IPR015422 | PFAM:PF00155 | PANTHER:PTHR11751 | PANTHER:PTHR11751:SF373 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 |
| InterPro:PyrdxlP-dep_Trfase_major | SUPFAM:SSF53383 | UniParc:UPI0004EDCEB7 | : | : | : |
Description
BnaA08g20540DBnaA08g20540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUC7]
Coordinates
chrLK032498:+:92584..95594
Molecular Weight (calculated)
52829.8 Da
IEP (calculated)
6.524
GRAVY (calculated)
-0.165
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEYDLLNE NVKKCQYAVR GELYLRASEL QKEGKKIIFT NVGNPHALGQ KPLTFPRQVV ALCQAPFLLD DPNVGMLFPA DAIARAKHYL SLTSGGLGAY
101: SDSRGLPGVR KEVAEFIQRR DGYPSDPELI FLTDGASKGV MQILNCVIRG EGDGILVPVP QYPLYSATIS LLGGSLVPYY LDESENWGLD VNNLRQSVAQ
201: ARSQGISVRA MVIINPGNPT GQCLSEANLK EILKFCYNEK LVLLGDEVYQ QNIYQDERPF ISSKKVLMDM GSPFSKGVQL VSFHTVSKGY WGECGQRGGY
301: FEMTNIPPRV VEEIYKVASI ALSPNVSAQI FMGLMVSPPK PGDISYDQFA RESKGILESL RRRAKIMTDG FNSCKNVVCN FTEGAMYSFP QIRLPPGALQ
401: AAKQAGKVPD VFYCLKLLEA TGISTVPGSG FGQKEGVFHL RTTILPAEEE MPEIMDSFKK FNDEFMAQYD NGFGYSRM
101: SDSRGLPGVR KEVAEFIQRR DGYPSDPELI FLTDGASKGV MQILNCVIRG EGDGILVPVP QYPLYSATIS LLGGSLVPYY LDESENWGLD VNNLRQSVAQ
201: ARSQGISVRA MVIINPGNPT GQCLSEANLK EILKFCYNEK LVLLGDEVYQ QNIYQDERPF ISSKKVLMDM GSPFSKGVQL VSFHTVSKGY WGECGQRGGY
301: FEMTNIPPRV VEEIYKVASI ALSPNVSAQI FMGLMVSPPK PGDISYDQFA RESKGILESL RRRAKIMTDG FNSCKNVVCN FTEGAMYSFP QIRLPPGALQ
401: AAKQAGKVPD VFYCLKLLEA TGISTVPGSG FGQKEGVFHL RTTILPAEEE MPEIMDSFKK FNDEFMAQYD NGFGYSRM
001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
Arabidopsis Description
GGAT1Glutamate--glyoxylate aminotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.