CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17290.1	CDY32970	AT5G42980.1	15352244
AT1G17290.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96776	Canola	mitochondrion	97.97	97.79
CDX81815	Canola	mitochondrion	95.38	93.99
CDY21752	Canola	mitochondrion	95.01	93.97
CDY26256	Canola	mitochondrion	91.68	92.36
CDY48485	Canola	plastid	91.5	91.67
AT1G17290.1	Thale cress	mitochondrion	89.83	89.5
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	74.49	82.75
Os07t0617800-01	Rice	mitochondrion	49.35	81.16
Zm00001d003953_P001	Maize	cytosol	13.31	80.9
VIT_09s0002g00340.t01	Wine grape	mitochondrion	76.34	78.52
GSMUA_Achr2P07320_001	Banana	cytosol	70.43	78.23
Solyc03g123600.2.1	Tomato	cytosol	69.87	78.1
TraesCS1D01G086700.1	Wheat	cytosol	57.67	77.61
Solyc06g063090.2.1	Tomato	extracellular	77.08	76.94
Zm00001d030557_P001	Maize	cytosol, extracellular	68.21	76.56
TraesCS1B01G102700.1	Wheat	golgi, plastid	68.02	76.35
TraesCS1A01G085600.1	Wheat	cytosol, golgi	68.02	76.35
GSMUA_Achr11P...	Banana	mitochondrion	71.53	76.18
Os10t0390500-01	Rice	cytosol, plasma membrane, plastid	67.84	75.98
KRH06285	Soybean	mitochondrion	75.23	75.93
GSMUA_Achr10P...	Banana	mitochondrion	73.01	75.53
KRH47719	Soybean	endoplasmic reticulum	75.05	75.05
KXG38638	Sorghum	cytosol	68.02	74.49
Zm00001d044135_P001	Maize	cytosol	7.58	73.21
EER99708	Sorghum	mitochondrion	71.9	71.9
Zm00001d022152_P001	Maize	mitochondrion	71.16	71.16
CDX68271	Canola	mitochondrion	16.45	69.53
Os03t0183600-00	Rice	extracellular	61.92	68.93
TraesCS2D01G175200.1	Wheat	golgi	69.69	67.68
HORVU2Hr1G030820.1	Barley	mitochondrion	69.5	67.5
TraesCS2A01G167500.1	Wheat	mitochondrion	69.32	67.45
TraesCS2B01G193600.1	Wheat	mitochondrion	69.87	67.38
Zm00001d006875_P001	Maize	plastid	68.58	66.37
Solyc03g123610.2.1	Tomato	plastid	72.27	64.52
HORVU1Hr1G018540.17	Barley	cytosol, golgi, plastid	66.73	64.12
CDX83913	Canola	cytosol, nucleus, peroxisome	14.42	60.94
CDY50645	Canola	cytosol	21.81	54.63
CDX91708	Canola	peroxisome	38.82	52.11
CDY25781	Canola	cytosol	5.55	51.72
CDY25780	Canola	peroxisome	38.45	51.61
CDY44130	Canola	cytosol	45.47	51.46
CDY04729	Canola	cytosol	45.47	51.46
Zm00001d032984_P001	Maize	mitochondrion	31.05	51.38
CDY41452	Canola	peroxisome	45.29	51.26
CDY61225	Canola	peroxisome	44.92	50.52
CDY66294	Canola	cytosol	44.73	50.31
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	11.83	48.85
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	11.83	48.85
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	11.83	48.85
CDY12474	Canola	peroxisome, plastid	44.18	44.51
Zm00001d014258_P002	Maize	cytosol	67.47	41.29
CDY03822	Canola	cytosol	9.8	41.09
CDX68272	Canola	nucleus	7.95	38.74
Zm00001d008277_P001	Maize	cytosol	28.1	35.68
CDX92755	Canola	cytosol	18.3	23.8
CDY42751	Canola	cytosol	19.59	23.5
CDX89355	Canola	cytosol	18.67	22.54
CDY71142	Canola	cytosol	18.48	22.32
CDX94359	Canola	cytosol	18.48	22.32
CDX75675	Canola	cytosol	17.56	21.06
CDY02111	Canola	cytosol	18.3	21.06
CDY05953	Canola	cytosol	18.3	21.06
CDY23035	Canola	cytosol	18.11	21.03
CDY72652	Canola	cytosol	7.76	20.9
CDY08163	Canola	cytosol	18.11	20.85
CDY66472	Canola	cytosol	15.53	20.84
CDX91604	Canola	mitochondrion, plastid	19.04	20.6
CDY46931	Canola	mitochondrion, plastid	19.04	20.6
CDX69326	Canola	cytosol	17.74	20.47
CDY69462	Canola	cytosol	17.56	20.26
CDX89520	Canola	cytosol	17.56	20.04
CDY25639	Canola	cytosol	17.19	19.62
CDY13251	Canola	cytosol	17.74	19.55
CDX86796	Canola	cytosol	17.56	19.47
CDY11360	Canola	cytosol	17.01	19.45
CDY65356	Canola	cytosol	17.01	19.45
CDX81296	Canola	cytosol	15.53	19.13
CDY18674	Canola	cytosol	15.53	19.13
CDX86161	Canola	cytosol	4.62	18.94
CDY45965	Canola	cytosol	18.85	18.78
CDY34015	Canola	cytosol	16.08	18.75
CDY45474	Canola	cytosol	18.11	18.74
CDY15174	Canola	cytosol	17.01	18.55
CDX83146	Canola	cytosol	15.9	18.53
CDX90035	Canola	cytosol	14.97	18.12
CDY43579	Canola	cytosol, mitochondrion, plastid	5.18	14.58
Os10t0390701-00	Rice	cytosol	1.48	7.41

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.3.1.1	GO:A0A078D6D2	InterPro:Aminotransferase_I/II	EnsemblPlants:CDX83914
ProteinID:CDX83914	ProteinID:CDX83914.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00139690001	InterPro:IPR015421
InterPro:IPR015422	PFAM:PF00155	PANTHER:PTHR11751	PANTHER:PTHR11751:SF466	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0004EF022A	SEG:seg	:	:

Description

BnaC08g17310D

Coordinates

chrLK031834:-:1228579..1232006

Molecular Weight (calculated)

59145.8 Da

IEP (calculated)

6.666

GRAVY (calculated)

-0.175

Length

541 amino acids

Sequence
(BLAST)

001: MRRFVIGQAK NLIDQTRRHH KSLRLLSLLA ASDSAPVLSS PRLFSSSSDM SGSGSDSSSS SLPVTLDSLN PKVLKCEYAV RGEIVNIAQK LQEDLKINKD
101: AYPFDEIIYC NIGNPQSLGQ QPITFFREVL ALCSHTALLD ESATHGLFSS DSIDRAWKIL DQIPGKATGA YSHSQGIKGL RDAIAAGIEA RDGFPADPND
201: IFMTDGASPG VHMMMQLLIS SEKDGILCPI PQYPLYSASI ALHGGSLVPY YLDEASGWGL EISELKKQLE DARSKGITVR ALAVINPGNP TGQVLAEENQ
301: REIVDFCKKE GLVLLADEVY QENVYVPDKK FHSFKKVARS MGYGEKDICL VSFQSISKGY YGECGKRGGY MEVTGFTSDV RAQIYKLASV NLCSNISGQI
401: LASLVMSPPK PGDDSYDSYI AEKEGILSSL AKRAKTLEEA LNKLEGVTCN RAEGAMYLFP CINLPQKAIA AAEAAKTAPD AFYCKRLLNA TGIVVVPGSG
501: FRQVPGTWHF RCTILPQEEK IPAIVNRLTE FHKNFMDEFR N

Best Arabidopsis Sequence Match ( AT1G17290.1 )
(BLAST)

001: MRRFVIGQAK NLIDQSRRRQ LHHHKNLSFV SLIPPFSAPS DSSSRHLSSS SSSDMSASDS SSSLPVTLDT INPKVIKCEY AVRGEIVNIA QKLQEDLKTN
101: KDAYPFDEII YCNIGNPQSL GQQPITFFRE VLALCSYTAL LDESATHGLF SSDSIERAWK ILDQIPGRAT GAYSHSQGIK GLRDAIADGI EARDGFPADP
201: NDIFMTDGAS PGVHMMMQLL ITSEKDGILC PIPQYPLYSA SIALHGGTLV PYYLDEASGW GLEISELKKQ LEDARSKGIT VRALAVINPG NPTGQVLSEE
301: NQRDVVKFCK QEGLVLLADE VYQENVYVPD KKFHSFKKVA RSMGYGEKDL ALVSFQSVSK GYYGECGKRG GYMEVTGFTS DVREQIYKMA SVNLCSNISG
401: QILASLIMSP PKPGDDSYES YIAEKDGILS SLARRAKTLE EALNKLEGVT CNRAEGAMYL FPCLHLPQKA IAAAEAEKTA PDNFYCKRLL KATGIVVVPG
501: SGFRQVPGTW HFRCTILPQE DKIPAIVDRL TAFHQSFMDE FRD

Arabidopsis Description

ALAAT1Alanine aminotransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4I7I0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.