Factsheet for TraesCS1B01G102700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579
plastid: 22160430
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 28628250

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17290.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT1G17290.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT1G17290.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT1G17290.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT1G17290.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT1G17290.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G085600.1	Wheat	cytosol, golgi	99.79	99.79
TraesCS1D01G086700.1	Wheat	cytosol	81.95	98.26
Zm00001d030557_P001	Maize	cytosol, extracellular	90.46	90.46
Os10t0390500-01	Rice	cytosol, plasma membrane, plastid	90.46	90.27
KXG38638	Sorghum	cytosol	90.66	88.46
GSMUA_Achr2P07320_001	Banana	cytosol	81.95	81.11
HORVU1Hr1G018540.17	Barley	cytosol, golgi, plastid	93.57	80.11
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	76.76	75.98
Solyc03g123600.2.1	Tomato	cytosol	74.48	74.17
VIT_09s0002g00340.t01	Wine grape	mitochondrion	79.05	72.43
KRH06285	Soybean	mitochondrion	77.59	69.78
KRH47719	Soybean	endoplasmic reticulum	77.59	69.13
Bra025984.1-P	Field mustard	cytosol, mitochondrion	76.14	68.34
Solyc06g063090.2.1	Tomato	extracellular	76.76	68.27
CDY26256	Canola	mitochondrion	75.93	68.16
CDX83914	Canola	mitochondrion	76.35	68.02
CDY48485	Canola	plastid	75.93	67.78
AT1G17290.1	Thale cress	mitochondrion	76.35	67.77
CDX96776	Canola	mitochondrion	76.14	67.71
Bra016607.1-P	Field mustard	mitochondrion	76.14	67.71
CDY21752	Canola	mitochondrion	76.56	67.46
Bra026675.1-P	Field mustard	mitochondrion	76.56	67.34
AT1G72330.3	Thale cress	mitochondrion	76.97	67.09
CDX81815	Canola	mitochondrion	76.35	67.03
TraesCS2B01G193600.1	Wheat	mitochondrion	77.8	66.84
CDX68271	Canola	mitochondrion	16.8	63.28
TraesCS5B01G214700.1	Wheat	cytosol	60.58	59.11
Solyc03g123610.2.1	Tomato	plastid	72.61	57.76
TraesCS2B01G280600.1	Wheat	plastid	50.83	51.15
CDY50645	Canola	cytosol	22.82	50.93
TraesCS5B01G066600.1	Wheat	cytosol	63.28	50.75
CDX83913	Canola	cytosol, nucleus, peroxisome	13.28	50.0
Zm00001d014258_P002	Maize	cytosol	90.04	49.09
CDX68272	Canola	nucleus	8.09	35.14
TraesCS3B01G125200.1	Wheat	plastid	18.05	19.12
TraesCS4B01G058200.1	Wheat	cytosol	18.67	18.56
TraesCS2B01G414800.1	Wheat	cytosol	18.67	18.52
Os10t0390701-00	Rice	cytosol	1.66	7.41

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.3.1.1	InterPro:Aminotransferase_I/II	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	PFAM:PF00155	PANTHER:PTHR11751	PANTHER:PTHR11751:SF466	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	EnsemblPlantsGene:TraesCS1B01G102700	EnsemblPlants:TraesCS1B01G102700.1	TIGR:cd00609	SEG:seg

Description

No Description!

Coordinates

chr1B:+:112748817..112753181

Molecular Weight (calculated)

52822.5 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.098

Length

482 amino acids

Sequence
(BLAST)

001: MAATVAVDNL NPKVLKCEYA VRGEIVIHAQ RLQQQLQTQP GSLPFDEILY CNIGNPQSLG QQPVTFFREV LALCDHPDLL KKEEIKTLFS ADSISRAKQI
101: LALIPGRATG AYSHSQGIKG LRDAIASGIA SRDGFPANAD DIFLTDGASP GVHLMMQLLI RNEKDGILVP IPQYPLYSAS IALHGGSLVP YYLNESTGWG
201: LEISDVKKQL EDARSRGIDV RALVVINPGN PTGQVLAEEN QYDIVKFCKN EGLVLLADEV YQENIYADNK KFHSFKKIVR SLGYGEEDLP LVSYQSVSKG
301: YYGECGKRGG YMEITGFSAP VREQIYKIAS VNLCSNITGQ ILASLVMNPP KASDESYASY KAEKDGILAS LARRAKALEI AFSKLEGITC NKAEGAMYLF
401: PQICLPQKAI EAAKAANKAP DAFYALRLLE STGIVVVPGS GFGQVPGTWH FRCTILPQEE KIPAIISRFT VFHETFMAEY RD

Best Arabidopsis Sequence Match ( AT1G72330.1 )
(BLAST)

001: MRRFLINQAK GLVDHSRRQH HHKSPSFLSP QPRPLASSPP ALSRFFSSTS EMSASDSTSS LPVTLDSINP KVLKCEYAVR GEIVNIAQKL QEDLKTNKDA
101: YPFDEIIYCN IGNPQSLGQL PIKFFREVLA LCDHASLLDE SETHGLFSTD SIDRAWRILD HIPGRATGAY SHSQGIKGLR DVIAAGIEAR DGFPADPNDI
201: FLTDGASPAV HMMMQLLLSS EKDGILSPIP QYPLYSASIA LHGGSLVPYY LDEATGWGLE ISDLKKQLEE ARSKGISVRA LVVINPGNPT GQVLAEENQR
301: DIVNFCKQEG LVLLADEVYQ ENVYVPDKKF HSFKKVARSL GYGEKDISLV SFQSVSKGYY GECGKRGGYM EVTGFTSDVR EQIYKMASVN LCSNISGQIL
401: ASLVMSPPKP GDDSYDSYMA ERDGILSSMA KRAKTLEDAL NSLEGVTCNR AEGAMYLFPR INLPQKAIEA AEAEKTAPDA FYCKRLLNAT GVVVVPGSGF
501: GQVPGTWHFR CTILPQEDKI PAIVNRLTEF HKSFMDEFRN

Arabidopsis Description

ALAAT2alanine aminotransferase 2 [Source:TAIR;Acc:AT1G72330]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.