Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G075560.1 | Barley | cytosol | 53.1 | 49.18 |
| TraesCS1D01G327500.1 | Wheat | cytosol, plastid | 51.33 | 48.74 |
| TraesCS7A01G562100.1 | Wheat | cytosol | 45.13 | 48.11 |
| AT5G42980.1 | Thale cress | cytosol | 47.79 | 45.76 |
| OQU78269 | Sorghum | cytosol | 50.44 | 45.24 |
| CDY36029 | Canola | cytosol | 46.9 | 44.92 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 45.13 | 44.74 |
| Bra014037.1-P | Field mustard | cytosol | 46.02 | 44.07 |
| Zm00001d038652_P003 | Maize | cytosol | 49.56 | 43.75 |
| AT1G19730.1 | Thale cress | cytosol | 46.02 | 43.7 |
| Bra036335.1-P | Field mustard | cytosol | 45.13 | 43.59 |
| AT1G45145.1 | Thale cress | cytosol | 45.13 | 43.22 |
| CDY53958 | Canola | cytosol | 44.25 | 42.73 |
| CDY39355 | Canola | cytosol | 44.25 | 42.02 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 42.48 | 41.74 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 41.59 | 41.23 |
| Bra025762.1-P | Field mustard | cytosol | 43.36 | 41.18 |
| CDY29406 | Canola | cytosol | 43.36 | 41.18 |
| KRH51778 | Soybean | endoplasmic reticulum | 41.59 | 40.17 |
| KRH15131 | Soybean | cytosol, nucleus | 41.59 | 39.5 |
| KRH61100 | Soybean | cytosol | 40.71 | 39.32 |
| CDY43592 | Canola | cytosol | 41.59 | 38.21 |
| Bra027469.1-P | Field mustard | cytosol | 41.59 | 38.21 |
| CDY32970 | Canola | cytosol | 41.59 | 38.21 |
| Solyc02g084710.2.1 | Tomato | extracellular | 39.82 | 38.14 |
| PGSC0003DMT400009306 | Potato | cytosol | 39.82 | 38.14 |
| Solyc04g080850.2.1 | Tomato | extracellular | 40.71 | 37.4 |
| KRH05879 | Soybean | endoplasmic reticulum | 40.71 | 37.4 |
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 38.94 | 36.67 |
| PGSC0003DMT400009623 | Potato | cytosol | 38.94 | 35.77 |
| TraesCS5D01G454800.1 | Wheat | cytosol | 39.82 | 34.35 |
| KRH28739 | Soybean | cytosol | 36.28 | 34.17 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 45.13 | 32.28 |
| TraesCS2D01G244400.1 | Wheat | cytosol | 37.17 | 30.88 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 30.97 | 30.7 |
| TraesCS1D01G114000.1 | Wheat | cytosol | 33.63 | 29.01 |
| TraesCS2D01G479600.1 | Wheat | cytosol | 30.97 | 25.18 |
| TraesCS1D01G301200.1 | Wheat | cytosol | 30.97 | 24.48 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G001000.1 | EnsemblPlantsGene:TraesCS7D01G001000 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 |
| InterPro:IPR013766 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF293 |
| PFAM:PF00085 | PFscan:PS51352 | SUPFAM:SSF52833 | TIGR:cd02947 | MapMan:10.6.1 | : |
Description
No Description!
Coordinates
chr7D:-:1076583..1077770
Molecular Weight (calculated)
12561.0 Da
IEP (calculated)
4.363
GRAVY (calculated)
0.040
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEVVEVGSL EAWTTYMAEA NSNKNLAVIY FSAKWSAPSR SISPVFDDLA KNHIDVTFLK VVVEVEDNMS IAEEFGVEAM PTFLFMKEGK VVDHLVGASE
101: YLLEEKMKQH TAA
101: YLLEEKMKQH TAA
001: MAAEGEVIAC HTVEDWTEKL KAANESKKLI VIDFTATWCP PCRFIAPVFA DLAKKHLDVV FFKVDVDELN TVAEEFKVQA MPTFIFMKEG EIKETVVGAA
101: KEEIIANLEK HKTVVAAA
101: KEEIIANLEK HKTVVAAA
Arabidopsis Description
TRX3Thioredoxin H3 [Source:UniProtKB/Swiss-Prot;Acc:Q42403]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.