Factsheet for TraesCS6A01G333900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15620.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT2G15620.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT2G15620.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT2G15620.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT2G15620.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT2G15620.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G313100.1	Wheat	plastid	99.0	99.0
TraesCS6B01G364600.1	Wheat	plastid	98.33	93.17
Os02t0765900-00	Rice	cytosol	39.87	85.61
HORVU6Hr1G080750.4	Barley	plastid	94.64	85.35
EES07578	Sorghum	plastid	84.42	84.99
Zm00001d052165_P001	Maize	plastid	82.08	82.08
Zm00001d052164_P002	Maize	plastid	82.08	82.08
Os01t0357100-02	Rice	plastid	85.26	81.18
Zm00001d018161_P001	Maize	plastid	81.57	80.36
CDY69481	Canola	mitochondrion	59.46	77.17
Bra039844.1-P	Field mustard	cytosol	64.66	76.13
CDY37232	Canola	plastid	71.02	72.6
AT2G15620.1	Thale cress	plastid	71.19	72.53
PGSC0003DMT400021310	Potato	plastid	70.52	72.09
PGSC0003DMT400066399	Potato	cytosol	70.85	72.06
CDY36642	Canola	plastid	70.52	71.84
GSMUA_Achr9P15320_001	Banana	plastid	73.87	71.82
CDX71230	Canola	plastid	70.35	71.67
Solyc01g108630.2.1	Tomato	plastid	70.35	71.55
CDY72359	Canola	plastid	49.08	71.29
Solyc10g050890.1.1	Tomato	plastid	69.51	71.06
Bra015227.1-P	Field mustard	plastid	69.68	70.63
VIT_03s0063g00370.t01	Wine grape	plastid	69.85	70.08
KRH71138	Soybean	plastid, vacuole	70.69	69.75
KRH50280	Soybean	plastid	70.18	68.46
TraesCS1A01G323400.1	Wheat	golgi	22.45	21.1

Protein Annotations

KEGG:00920+1.8.1.2	MapMan:25.1.4.2	Gene3D:3.30.413.10	Gene3D:3.90.480.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0010167	GO:GO:0016020	GO:GO:0016491	GO:GO:0020037	GO:GO:0048046	GO:GO:0051536
GO:GO:0055114	InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077
PFAM:PF03460	PRINTS:PR00397	ScanProsite:PS00365	PANTHER:PTHR32439	PANTHER:PTHR32439:SF0	SUPFAM:SSF55124
SUPFAM:SSF56014	EnsemblPlantsGene:TraesCS6A01G333900	EnsemblPlants:TraesCS6A01G333900.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:+:564882756..564885636

Molecular Weight (calculated)

66077.4 Da

IEP (calculated)

7.273

GRAVY (calculated)

-0.318

Length

597 amino acids

Sequence
(BLAST)

001: MSSSASLQSF LPPSAHAARS SSRHRPSRAR PFQCAAVSAP SSSAASPSAS AVPAERLEPR VEQREGGYWV LKEKYRTSLN PQEKVKLGKE PMALFTEGGI
101: KELAKLPMEQ IDADKLTKED VDVRLKWLGL FHRRKQQYGR FMMRLKLPNG VTTSEQTRYL AGVIEKYGKE GCADVTTRQN WQIRGVTLPD VPEILEGLRS
201: VGLTSLQSGM DNVRNPVGSP LAGIDPLEIV DTRPYTNLLS SYITNNSEGN LAITNLPRKW NVCVIGTHDL YEHPHINDLA YMPAEKDGKF GFNLLVGGFI
301: SPKRWGEALP LDAWVPGDDI IPVCKAVLEA FRDLGTRGNR QKTRMMWLID ELGMEAFRSE IEKRMPNGVL ERAAAEDLID KKWERRDYLG VHPQKQEGLS
401: FVGLHVPVGR LQAADMFELA RLADEYGSGE LRLTVEQNIV LPNVRNDKVE ALLAEPLLEK FSAHPSLLMK GLVACTGNQF CGQAIIETKA RALQVTRDVE
501: ARVSVPRAVR MHWTGCPNSC AQVQVADIGF MGCLTKNSSG KIVEAADIFV GGRVGSDSHL TGVYKKAVPC EDLVPVVADL LVERFGAVPR EREEDEE

Best Arabidopsis Sequence Match ( AT2G15620.1 )
(BLAST)

001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED

Arabidopsis Description

NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.