Factsheet for PGSC0003DMT400066399

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108630.2.1	Tomato	plastid	98.81	98.81
PGSC0003DMT400021310	Potato	plastid	84.67	85.1
CDY69481	Canola	mitochondrion	64.74	82.61
Bra039844.1-P	Field mustard	cytosol	71.04	82.25
AT2G15620.1	Thale cress	plastid	77.51	77.65
CDY37232	Canola	plastid	77.17	77.57
CDX71230	Canola	plastid	77.0	77.13
Os02t0765900-00	Rice	cytosol	36.46	76.98
CDY36642	Canola	plastid	76.83	76.96
CDY72359	Canola	plastid	53.66	76.64
VIT_03s0063g00370.t01	Wine grape	plastid	77.51	76.47
Bra015227.1-P	Field mustard	plastid	76.49	76.23
KRH71138	Soybean	plastid, vacuole	78.02	75.7
KRH50280	Soybean	plastid	77.17	74.02
EES07578	Sorghum	plastid	73.59	72.85
GSMUA_Achr9P15320_001	Banana	plastid	74.62	71.34
TraesCS6A01G333900.1	Wheat	plastid	72.06	70.85
TraesCS6D01G313100.1	Wheat	plastid	72.06	70.85
Zm00001d052164_P002	Maize	plastid	70.7	69.51
Zm00001d052165_P001	Maize	plastid	70.7	69.51
Zm00001d018161_P001	Maize	plastid	71.21	68.98
TraesCS6B01G364600.1	Wheat	plastid	71.72	66.83
Os01t0357100-02	Rice	plastid	71.04	66.51
HORVU6Hr1G080750.4	Barley	plastid	71.89	63.75
PGSC0003DMT400026666	Potato	extracellular	23.68	20.12

Protein Annotations

KEGG:00920+1.8.1.2	MapMan:25.1.4.2	Gene3D:3.30.413.10	Gene3D:3.90.480.20	ProteinID:CBL43265	ProteinID:CBL43265.1
EMBL:FN691930	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0020037	GO:GO:0051536	GO:GO:0055114	UniProt:M1CFI4	InterPro:NO2/SO3_Rdtase_4Fe4S_dom
InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077	PFAM:PF03460	EnsemblPlantsGene:PGSC0003DMG400025823
PGSC:PGSC0003DMG400025823	EnsemblPlants:PGSC0003DMT400066399	PRINTS:PR00397	ScanProsite:PS00365	PANTHER:PTHR32439	PANTHER:PTHR32439:SF0
SUPFAM:SSF55124	SUPFAM:SSF56014	UniParc:UPI0002961D72	SEG:seg	:	:

Description

Nitrite reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400025823]

Coordinates

chr1:+:84978012..84980823

Molecular Weight (calculated)

65957.6 Da

IEP (calculated)

6.168

GRAVY (calculated)

-0.370

Length

587 amino acids

Sequence
(BLAST)

001: MASFSIKFLA PSLPNPTRFS KSSIVKLNAT PPQTVAAVGT PEVAAERLEP RVEEKDGYWI LKEQFRQGIN PQEKVKIEKE PMKLFMENGI EELAKIPIEE
101: IDKSKLTKDD IDVRLKWLGL FHRRKNQYGR FMMRLKLPNG VTTSAQTRYL ASVIRKYGEE GCADITTRQN WQIRGVVLPD VPEILKGLEE VGLTSLQSGM
201: DNVRNPVGNP LAGIDPEEIV DTRPYTNLLS QFITGNSRGN PAVSNLPRKW NPCVVGSHDL YEHPHINDLA YMPAIKDGRF GFNLLVGGFF SAKRCDEAIP
301: LDAWVPADDV VPVCKAILEA FRDLGFRGNR QKCRMMWLID ELGVEGFRAE VEKRMPQQEL ERASPEDLVQ KQWERRDYLG VHPQKQEGYS FIGLHIPVGR
401: VQADDMNDLA RLADEYGSGE LRLTVEQNII IPNIENSKIE ALLKEPILSK FSPDPPILMK GLVACTGNQF CGQAIIETKA RSLKITEEVQ RQVSLTRPVR
501: MHWTGCPNTC AQVQVADIGF MGCLTRDKDK KTVEGADVFL GGRIGSDSHL GEVYKKAVPC DELVPLIVDL LVKNFGAVPR EREETED

Best Arabidopsis Sequence Match ( AT2G15620.1 )
(BLAST)

001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED

Arabidopsis Description

NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.