CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15620.1	CDY32970	AT5G42980.1	15352244
AT2G15620.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36642	Canola	plastid	98.12	98.12
CDY69481	Canola	mitochondrion	74.4	94.78
CDY72359	Canola	plastid	65.36	93.19
Bra015227.1-P	Field mustard	plastid	93.34	92.87
AT2G15620.1	Thale cress	plastid	91.64	91.64
CDY37232	Canola	plastid	87.71	88.01
Os02t0765900-00	Rice	cytosol	37.03	78.06
Solyc01g108630.2.1	Tomato	plastid	77.13	77.0
PGSC0003DMT400066399	Potato	cytosol	77.13	77.0
PGSC0003DMT400021310	Potato	plastid	76.45	76.71
Solyc10g050890.1.1	Tomato	plastid	75.6	75.86
KRH71138	Soybean	plastid, vacuole	77.99	75.54
VIT_03s0063g00370.t01	Wine grape	plastid	76.28	75.13
KRH50280	Soybean	plastid	78.16	74.84
EES07578	Sorghum	plastid	72.87	72.01
TraesCS6D01G313100.1	Wheat	plastid	71.84	70.52
Zm00001d052164_P002	Maize	plastid	71.84	70.52
Zm00001d052165_P001	Maize	plastid	71.84	70.52
GSMUA_Achr9P15320_001	Banana	plastid	73.72	70.36
TraesCS6A01G333900.1	Wheat	plastid	71.67	70.35
Zm00001d018161_P001	Maize	plastid	71.33	68.98
Os01t0357100-02	Rice	plastid	71.84	67.15
TraesCS6B01G364600.1	Wheat	plastid	71.67	66.67
HORVU6Hr1G080750.4	Barley	plastid	71.67	63.44
CDY66993	Canola	plastid	19.11	21.71
CDY44868	Canola	plastid	23.38	21.24
CDY00681	Canola	plastid	22.87	20.84
CDY41362	Canola	plastid	22.53	20.66
CDX70213	Canola	plastid	22.7	20.56
CDX73918	Canola	plastid	22.53	20.53

Protein Annotations

KEGG:00920+1.8.1.2	MapMan:25.1.4.2	Gene3D:3.30.413.10	Gene3D:3.90.480.20	GO:A0A078C304	EnsemblPlants:CDX71230
ProteinID:CDX71230	ProteinID:CDX71230.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0020037	GO:GO:0051536	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00144813001
InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077	PFAM:PF03460
PRINTS:PR00397	ScanProsite:PS00365	PANTHER:PTHR32439	PANTHER:PTHR32439:SF0	MetaCyc:PWY-6683	SUPFAM:SSF55124
SUPFAM:SSF56014	UniPathway:UPA00140	UniParc:UPI0004EE399E	SEG:seg	:	:

Description

BnaC07g05090D

Coordinates

chrLK031792:+:1524918..1527103

Molecular Weight (calculated)

65589.9 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.400

Length

586 amino acids

Sequence
(BLAST)

001: MTSSSSLSLH FTALLPSKPR RSVIVGAQTA HPAESTASPT VDADRLEPRV ELRDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEEID
101: SEKSSKEDVD VRLKWLGLFH RRKHHYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPDEIVDT RPYTNLLSQF ITANSRGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NVLVGGFFSP KRCEEAIPLD
301: AWVPAEDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRAEVE KRMPSGKLER ASSEDLVNKQ WERRDYFGVH PQKQEGLSYI GLHVPVGRLQ
401: ADDMDELARL ADTYGTGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGNQFC GQAIIETKLR ALKVTEEVER LVAVPKPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGENGK PVEGADVYVG GRIGSDSHLG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REDNED

Best Arabidopsis Sequence Match ( AT2G15620.1 )
(BLAST)

001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED

Arabidopsis Description

NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.