Factsheet for TraesCS6B01G364600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15620.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT2G15620.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT2G15620.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT2G15620.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT2G15620.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT2G15620.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G313100.1	Wheat	plastid	93.33	98.49
TraesCS6A01G333900.1	Wheat	plastid	93.17	98.33
Os02t0765900-00	Rice	cytosol	38.1	86.33
HORVU6Hr1G080750.4	Barley	plastid	90.63	86.25
EES07578	Sorghum	plastid	80.63	85.67
Zm00001d052165_P001	Maize	plastid	78.41	82.75
Zm00001d052164_P002	Maize	plastid	78.41	82.75
Os01t0357100-02	Rice	plastid	82.06	82.46
Zm00001d018161_P001	Maize	plastid	77.94	81.02
CDY69481	Canola	mitochondrion	56.51	77.39
Bra039844.1-P	Field mustard	cytosol	61.27	76.13
CDY37232	Canola	plastid	67.3	72.6
PGSC0003DMT400021310	Potato	plastid	67.14	72.43
AT2G15620.1	Thale cress	plastid	67.14	72.18
CDY36642	Canola	plastid	66.83	71.84
PGSC0003DMT400066399	Potato	cytosol	66.83	71.72
CDX71230	Canola	plastid	66.67	71.67
Solyc10g050890.1.1	Tomato	plastid	66.35	71.58
GSMUA_Achr9P15320_001	Banana	plastid	69.68	71.5
Solyc01g108630.2.1	Tomato	plastid	66.35	71.21
CDY72359	Canola	plastid	46.35	71.05
Bra015227.1-P	Field mustard	plastid	66.03	70.63
VIT_03s0063g00370.t01	Wine grape	plastid	66.51	70.42
KRH71138	Soybean	plastid, vacuole	66.51	69.26
KRH50280	Soybean	plastid	66.98	68.95
TraesCS1B01G336300.1	Wheat	plastid	20.95	20.75

Protein Annotations

KEGG:00920+1.8.1.2	MapMan:25.1.4.2	Gene3D:3.30.413.10	Gene3D:3.90.480.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0010167	GO:GO:0016020	GO:GO:0016491	GO:GO:0020037	GO:GO:0048046	GO:GO:0051536
GO:GO:0055114	InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077
PFAM:PF03460	PRINTS:PR00397	ScanProsite:PS00365	PANTHER:PTHR32439	PANTHER:PTHR32439:SF0	SUPFAM:SSF55124
SUPFAM:SSF56014	EnsemblPlantsGene:TraesCS6B01G364600	EnsemblPlants:TraesCS6B01G364600.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6B:+:636392750..636395667

Molecular Weight (calculated)

69993.3 Da

IEP (calculated)

7.706

GRAVY (calculated)

-0.305

Length

630 amino acids

Sequence
(BLAST)

001: MASSASLQSF LPPSAHAATS SSRHRPNRAR PFQCAAVSAP SSSAASPSAS AVPAERLEPR VEQREGGYWV LKEKYRTSLN PQEKVKLGKE PMALFTEGGI
101: KDLAKLPMEQ IDADKLTKED VDVRLKWLGL FHRRKQQYGR FMMRLKLPNG VTTSEQTRYL ASVIEKYGKE GCADVTTRQN WQIRGVTLPD VPEILDGLRS
201: VGLTSLQSGM DNVRNPVGSP LAGIDPLEIV DTRPYTNLLS SYITNNSEGN LAITNLPRKW NVCVIGTHDL YEHPHINDLA YMPAEKDGKF GFNLLVGGFI
301: SPKRWGEALP LDAWVPGDDI IPVCKAVLEA FRDLGTRGNR QKTRMMWLID ELVSFPQTLE TKRHKSWLMR MYVVLNFWCS GDAMQGMEAF RSEIEKRMPN
401: GVLERAAAED LIDKKWERRD YLGVHPQKQE GLSFVGLHVP VGRLQAADMF ELARLADEYG SGELRLTVEQ NIVLPNVRND KVEALLAEPL LQKFSAHPSL
501: LMKGLVACTG NQFCGQAIIE TKARALQVTR DVEARVSVPK AVRMHWTGCP NSCAQVQVAD IGFMGCLTKN SSGKIVEAAD IFVGGRVGSD SHLTGVYKKA
601: VPCEDLVPIV ADLLVERFGA VPREREEDEE

Best Arabidopsis Sequence Match ( AT2G15620.1 )
(BLAST)

001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED

Arabidopsis Description

NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.