CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15620.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052165_P001	Maize	plastid	91.4	90.79
Zm00001d052164_P002	Maize	plastid	91.4	90.79
Zm00001d018161_P001	Maize	plastid	90.22	88.28
Os02t0765900-00	Rice	cytosol	40.64	86.69
TraesCS6D01G313100.1	Wheat	plastid	85.5	84.92
TraesCS6A01G333900.1	Wheat	plastid	84.99	84.42
TraesCS6B01G364600.1	Wheat	plastid	85.67	80.63
Os01t0357100-02	Rice	plastid	83.98	79.43
CDY69481	Canola	mitochondrion	60.37	77.83
Bra039844.1-P	Field mustard	cytosol	66.27	77.51
HORVU6Hr1G080750.4	Barley	plastid	85.5	76.59
PGSC0003DMT400021310	Potato	plastid	72.85	73.97
GSMUA_Achr9P15320_001	Banana	plastid	76.56	73.94
CDY37232	Canola	plastid	72.68	73.8
PGSC0003DMT400066399	Potato	cytosol	72.85	73.59
AT2G15620.1	Thale cress	plastid	72.68	73.55
Solyc01g108630.2.1	Tomato	plastid	72.51	73.25
CDY36642	Canola	plastid	72.01	72.87
CDX71230	Canola	plastid	72.01	72.87
Solyc10g050890.1.1	Tomato	plastid	71.5	72.6
CDY72359	Canola	plastid	50.08	72.26
KRH71138	Soybean	plastid, vacuole	73.52	72.07
Bra015227.1-P	Field mustard	plastid	71.16	71.65
VIT_03s0063g00370.t01	Wine grape	plastid	71.5	71.26
KRH50280	Soybean	plastid	73.19	70.92
EES19776	Sorghum	plastid	21.75	20.25

Protein Annotations

KEGG:00920+1.8.1.2	MapMan:25.1.4.2	Gene3D:3.30.413.10	Gene3D:3.90.480.20	EntrezGene:8075200	UniProt:C5XSV1
EnsemblPlants:EES07578	ProteinID:EES07578	ProteinID:EES07578.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0010167
GO:GO:0016020	GO:GO:0016491	GO:GO:0020037	GO:GO:0048046	GO:GO:0051536	GO:GO:0055114
InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077	PFAM:PF03460
PRINTS:PR00397	ScanProsite:PS00365	PANTHER:PTHR32439	PANTHER:PTHR32439:SF0	MetaCyc:PWY-6683	EnsemblPlantsGene:SORBI_3004G309300
SUPFAM:SSF55124	SUPFAM:SSF56014	unigene:Sbi.15370	UniParc:UPI0001A86145	RefSeq:XP_002454602.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:64647406..64651755

Molecular Weight (calculated)

65889.1 Da

IEP (calculated)

6.739

GRAVY (calculated)

-0.342

Length

593 amino acids

Sequence
(BLAST)

001: MASSASLQRF LPPSSHAATA SSSRRRTGRA RAAVSMPPSS PPATGEVPAE RLEPRVEERE GGYWVLKEKY RTGLNPQEKV KLEKEPMGLF MEDGIKDLAK
101: IPMEEIDAAK LTKDDVDVRL KWLGLFHRRK HQYGRFMMRL KLPNGVTTSE QTRYLASVIE AYGADGCADV TTRQNWQIRG VTLPDVPAIL DGLRAVGLTS
201: LQSGMDNVRN PVGNPLAGVD PHEIVDTRPY TNLLSSYITN NSQGNTTITN LPRKWNVCVI GSHDLYEHPH INDLAYMPAV KDGKFGFNLL VGGFISPKRW
301: AEALPLDAWV AGDDVVPVCK AILEAYRDLG FRGNRQKTRM MWLIDELGME VFRSEVEKRM PNGVLERAAA EDLVDKTWER RDYLGVHPQK QEGLSYVGLH
401: VPVGRLQAAD MFELARLADE YGTGELRLTV EQNIVLPNVS NERVDALLAE PLLRQRFSPE PSLLLKGLVA CTGNQFCGQA IIETKARALQ VTREVEKRVS
501: VPRPVRMHWT GCPNSCGQVQ VADIGFMGCL TKDSDGKIVE AADIFVGGRV GSDSHLADVY KKSVPCKDLV PIVADLLVER FGAVPREREE DEE

Best Arabidopsis Sequence Match ( AT2G15620.1 )
(BLAST)

001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED

Arabidopsis Description

NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.