Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038652_P003 | Maize | cytosol | 87.3 | 85.94 |
| HORVU1Hr1G075560.1 | Barley | cytosol | 69.84 | 72.13 |
| TraesCS1B01G338800.1 | Wheat | cytosol, golgi, plastid, unclear | 69.84 | 69.29 |
| TraesCS1A01G325600.1 | Wheat | cytosol | 69.84 | 67.69 |
| TraesCS1D01G327500.1 | Wheat | cytosol, plastid | 61.9 | 65.55 |
| Bra036335.1-P | Field mustard | cytosol | 57.14 | 61.54 |
| CDY53958 | Canola | cytosol | 57.14 | 61.54 |
| AT5G42980.1 | Thale cress | cytosol | 57.14 | 61.02 |
| Bra014037.1-P | Field mustard | cytosol | 57.14 | 61.02 |
| CDY36029 | Canola | cytosol | 57.14 | 61.02 |
| AT1G45145.1 | Thale cress | cytosol | 56.35 | 60.17 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 52.38 | 57.89 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 50.79 | 56.14 |
| KRH51778 | Soybean | endoplasmic reticulum | 49.21 | 52.99 |
| CDY39355 | Canola | cytosol | 50.0 | 52.94 |
| Bra025762.1-P | Field mustard | cytosol | 50.0 | 52.94 |
| CDY29406 | Canola | cytosol | 50.0 | 52.94 |
| CDY43592 | Canola | cytosol | 51.59 | 52.85 |
| Bra027469.1-P | Field mustard | cytosol | 51.59 | 52.85 |
| CDY32970 | Canola | cytosol | 51.59 | 52.85 |
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 50.0 | 52.5 |
| Solyc04g080850.2.1 | Tomato | extracellular | 50.79 | 52.03 |
| PGSC0003DMT400009623 | Potato | cytosol | 50.79 | 52.03 |
| KRH61100 | Soybean | cytosol | 47.62 | 51.28 |
| AT1G19730.1 | Thale cress | cytosol | 48.41 | 51.26 |
| KRH15131 | Soybean | cytosol, nucleus | 48.41 | 51.26 |
| OQU88584 | Sorghum | cytosol | 47.62 | 50.85 |
| KRH28739 | Soybean | cytosol | 48.41 | 50.83 |
| TraesCS7D01G001000.1 | Wheat | cytosol | 45.24 | 50.44 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 46.03 | 50.43 |
| KRH05879 | Soybean | endoplasmic reticulum | 49.21 | 50.41 |
| PGSC0003DMT400009306 | Potato | cytosol | 46.83 | 50.0 |
| Solyc02g084710.2.1 | Tomato | extracellular | 46.03 | 49.15 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 44.44 | 49.12 |
| EER98090 | Sorghum | cytosol | 39.68 | 44.25 |
| KXG34558 | Sorghum | cytosol | 37.3 | 38.21 |
| EES19700 | Sorghum | cytosol | 38.89 | 37.69 |
| EER90722 | Sorghum | cytosol | 39.68 | 37.59 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 46.83 | 37.34 |
| EES19112 | Sorghum | cytosol | 36.51 | 34.33 |
| KXG31771 | Sorghum | cytosol | 35.71 | 30.0 |
| OQU82388 | Sorghum | cytosol | 27.78 | 27.13 |
| KXG21303 | Sorghum | plastid | 34.13 | 22.4 |
Protein Annotations
| MapMan:10.6.1 | MapMan:18.7.2 | Gene3D:3.40.30.10 | EntrezGene:8080085 | UniProt:A0A1Z5R412 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | InterPro:IPR013766 |
| EnsemblPlants:OQU78269 | ProteinID:OQU78269 | ProteinID:OQU78269.1 | PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 |
| ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF293 | EnsemblPlantsGene:SORBI_3009G190800 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0001A88AE8 | RefSeq:XP_002440041.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:54283711..54286608
Molecular Weight (calculated)
13788.7 Da
IEP (calculated)
4.593
GRAVY (calculated)
0.132
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTEAAAAT PVAPAEGSVI AIHSLDEWSI QIEEANSAKK LVVIDFTATW CPPCRMIAPV FAELAKKHPN VVFLKVDVDE MKTIAEQFSV EAMPTFLFMR
101: EGDVKDRVVG AAKEELANKL QLQMAQ
101: EGDVKDRVVG AAKEELANKL QLQMAQ
001: MAAEGEVIAC HTVEDWTEKL KAANESKKLI VIDFTATWCP PCRFIAPVFA DLAKKHLDVV FFKVDVDELN TVAEEFKVQA MPTFIFMKEG EIKETVVGAA
101: KEEIIANLEK HKTVVAAA
101: KEEIIANLEK HKTVVAAA
Arabidopsis Description
TRX3Thioredoxin H3 [Source:UniProtKB/Swiss-Prot;Acc:Q42403]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.