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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 9
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G35630.1 OQU78269 AT5G42980.1 15352244
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os04t0659100-01 Rice plastid 90.53 91.59
TraesCS2D01G500600.1 Wheat plastid 86.61 87.82
TraesCS2A01G500400.1 Wheat plastid 86.61 87.82
TraesCS2B01G528300.1 Wheat plastid 85.68 87.71
GSMUA_Achr9P17480_001 Banana cytosol 72.06 87.64
GSMUA_Achr3P09120_001 Banana mitochondrion 78.52 84.16
VIT_05s0020g02480.t01 Wine grape plastid 79.91 80.09
VIT_07s0104g00610.t01 Wine grape plastid 79.91 79.91
OQU92979 Sorghum cytosol 65.36 79.27
Solyc01g080280.2.1 Tomato plastid 78.52 78.7
PGSC0003DMT400011133 Potato cytosol 78.29 78.47
KXG30808 Sorghum cytosol 64.2 78.09
Bra035392.1-P Field mustard plastid 77.14 78.04
CDX74644 Canola plastid 77.14 78.04
Bra035529.1-P Field mustard plastid 76.67 77.57
CDY49365 Canola plastid 69.98 76.9
AT5G35630.1 Thale cress plastid 76.21 76.74
OQU91109 Sorghum cytosol 63.05 74.39
CDX84116 Canola plastid 40.65 71.26
CDY33684 Canola plastid 77.14 68.3
KRH25519 Soybean plastid 22.17 50.53
PGSC0003DMT400045640 Potato cytosol, plastid 14.78 30.48
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2MapMan:25.1.5.1.2Gene3D:3.10.20.70
Gene3D:3.30.590.40UniProt:A0A1B6PNS7GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004356
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005576GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0005829GO:GO:0005840GO:GO:0006542GO:GO:0006807
GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009535
GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009628GO:GO:0009651GO:GO:0009719
GO:GO:0009735GO:GO:0009941GO:GO:0009987GO:GO:0016020GO:GO:0016874GO:GO:0022626
GO:GO:0046686GO:GO:0048046InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_N_conserv_site
InterPro:Gln_synth_cat_domInterPro:Gln_synth_gly_rich_siteInterPro:IPR036651EnsemblPlants:KXG27313ProteinID:KXG27313ProteinID:KXG27313.1
PFAM:PF00120PFAM:PF03951ScanProsite:PS00180ScanProsite:PS00181PANTHER:PTHR20852PANTHER:PTHR20852:SF53
MetaCyc:PWY-381MetaCyc:PWY-5675MetaCyc:PWY-6549MetaCyc:PWY-6963MetaCyc:PWY-6964SMART:SM01230
EnsemblPlantsGene:SORBI_3006G249400SUPFAM:SSF54368SUPFAM:SSF55931UniParc:UPI0001C804D2SEG:seg:
Description
hypothetical protein
Coordinates
chr6:-:58873522..58878034
Molecular Weight (calculated)
47040.8 Da
IEP (calculated)
6.868
GRAVY (calculated)
-0.358
Length
433 amino acids
Sequence
(BLAST)
001: MAAQAVVPAM QCQVGVKAAA GARARPAAAG GRVWGVRSRT GRGGASPGFK VMAVSTGSTG VVPRLEQLLN MDTTPYTDKI IAEYIWVGGS GIDIRSKSRT
101: ISKPVEDPSE LPKWNYDGSS TGQAPGEDSE VILYPQAIFK DPFRGGNNIL VICDTYTPQG EPLPTNKRHR AAQIFSDPKV VEQVPWFGIE QEYTLLQKDV
201: NWPLGWPVGG YPGPQGPYYC AVGADKSFGR DISDAHYKAC LYAGINISGT NGEVMPGQWE YQVGPSVGIE AGDHIWISRY ILERITEQAG VVLTLDPKPI
301: QGDWNGAGCH TNYSTKTMRE DGGFEDIKRA ILNLSLRHDL HISAYGEGNE RRLTGKHETA SIETFSWGVA NRGCSVRVGR DTEAKGKGYL EDRRPASNMD
401: PYIVTGLLAE TTILWQPTLE AEVLAAKKLA LKV
Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)
001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV
Arabidopsis Description
GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.