CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35630.1	CDY32970	AT5G42980.1	15352244
AT5G35630.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84116	Canola	plastid	61.17	97.57
CDX74644	Canola	plastid	97.72	89.95
AT5G35630.1	Thale cress	plastid	91.12	83.49
GSMUA_Achr9P17480_001	Banana	cytosol	72.33	80.06
CDY33684	Canola	plastid	97.72	78.73
Solyc01g080280.2.1	Tomato	plastid	85.03	77.55
PGSC0003DMT400011133	Potato	cytosol	84.77	77.31
VIT_05s0020g02480.t01	Wine grape	plastid	81.98	74.77
VIT_07s0104g00610.t01	Wine grape	plastid	81.98	74.6
CDY52941	Canola	cytosol	67.26	74.44
CDY49656	Canola	cytosol	67.26	74.44
CDY16439	Canola	cytosol	67.26	74.44
GSMUA_Achr3P09120_001	Banana	mitochondrion	76.14	74.26
CDY38104	Canola	cytosol	66.75	73.88
CDX69442	Canola	cytosol	66.75	73.88
CDX85499	Canola	cytosol	66.5	73.6
CDX74573	Canola	cytosol	66.5	73.6
CDY01727	Canola	cytosol	64.47	72.78
CDX95818	Canola	cytosol	64.72	72.03
CDX92165	Canola	cytosol	64.72	72.03
Os04t0659100-01	Rice	plastid	77.67	71.5
CDY68179	Canola	cytosol	64.21	71.47
CDY68590	Canola	cytosol	64.21	71.47
TraesCS2D01G500600.1	Wheat	plastid	75.89	70.02
TraesCS2A01G500400.1	Wheat	plastid	75.89	70.02
KXG27313	Sorghum	plastid	76.9	69.98
TraesCS2B01G528300.1	Wheat	plastid	75.13	69.98
CDX75942	Canola	cytosol	61.17	67.89
CDX82343	Canola	cytosol	60.66	67.32
CDX93671	Canola	cytosol	60.66	66.95
CDY49672	Canola	cytosol	60.66	66.95
CDY27610	Canola	cytosol	27.92	52.63
CDY27650	Canola	mitochondrion	21.57	50.3
KRH25519	Soybean	plastid	24.11	50.0
CDX98429	Canola	plastid	17.26	32.38

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.2	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:A0A078IEQ7	UniProt:A0A078IEQ7	EnsemblPlants:CDY49365	ProteinID:CDY49365	ProteinID:CDY49365.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524
GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016874	EnsemblPlantsGene:GSBRNA2T00092908001	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site
InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180
ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF53	MetaCyc:PWY-381	MetaCyc:PWY-5675	MetaCyc:PWY-6549
MetaCyc:PWY-6963	MetaCyc:PWY-6964	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI0004EE563B

Description

BnaA08g29950DGlutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A078IEQ7]

Coordinates

chrLK032827:+:86988..89702

Molecular Weight (calculated)

43646.7 Da

IEP (calculated)

7.076

GRAVY (calculated)

-0.495

Length

394 amino acids

Sequence
(BLAST)

001: MAQILAASPT CQMKLTKPSP IASSKLWSSV MLKQKKQNSS KLRSFKVMAL QSDNSTINRV ESLLNLDTKP FTDRIIAEYI WIGGSGIDLR SKSRTLEKPV
101: EDPSELPKWN YDGSSTGQAP GEDSEVILYP QAIFRDPFRG GDNILVICDT YTPAGEPIPT NKRARAAEIF SNKKVNEEIP WFGIEQEYTL LQPNVNWPLG
201: WPVGAYPGPQ GPYYCGVGAE KSWGRDISDA HYKACLYAGI NISGTNGEVM PGQWEFQVGP SVGIEAGDHV WCARYLLERI TEQAGVVLTL DPKPIEGDWN
301: GAGCHTNYST KSMREDGGFE VIKKAILNLS LRHMEHISAY GEGNERRLTG KHETASIDQF SWGVANRGCS IRVGRDTEKK GKGYLEDRRP ASIL

Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)

001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV

Arabidopsis Description

GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.