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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY49656 Canola cytosol 98.88 98.88
Bra008612.1-P Field mustard cytosol 98.6 98.6
CDY38104 Canola cytosol 96.63 96.63
CDX85499 Canola cytosol 96.35 96.35
AT5G16570.1 Thale cress cytosol 96.07 96.07
CDY52941 Canola cytosol 88.76 88.76
CDY16439 Canola cytosol 88.2 88.2
Solyc11g011380.1.1 Tomato extracellular 87.36 87.85
PGSC0003DMT400034421 Potato cytosol 87.36 87.85
CDY01727 Canola cytosol 85.96 87.68
CDX74573 Canola cytosol 87.64 87.64
Solyc05g051250.2.1 Tomato unclear 87.08 87.08
VIT_01s0011g02200.t01 Wine grape cytosol 86.8 86.8
PGSC0003DMT400037822 Potato cytosol 86.8 86.8
KRH48674 Soybean endoplasmic reticulum 85.67 85.67
KRH39031 Soybean cytosol, nucleus 85.39 85.39
CDX92165 Canola cytosol 83.15 83.62
CDX95818 Canola cytosol 83.15 83.62
CDY68179 Canola cytosol 81.46 81.92
CDY68590 Canola cytosol 81.46 81.92
CDX75942 Canola cytosol 78.65 78.87
CDY49672 Canola cytosol 78.37 78.15
CDX93671 Canola cytosol 78.37 78.15
CDX82343 Canola cytosol 77.53 77.75
CDY49365 Canola plastid 73.88 66.75
CDX74644 Canola plastid 78.37 65.19
CDX84116 Canola plastid 42.42 61.13
CDY33684 Canola plastid 78.37 57.06
CDY27610 Canola cytosol 33.15 56.46
CDY27650 Canola mitochondrion 25.28 53.25
CDX98429 Canola plastid 21.35 36.19
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2MapMan:25.1.5.1.1Gene3D:3.10.20.70
Gene3D:3.30.590.40GO:A0A078BYL3EnsemblPlants:CDX69442ProteinID:CDX69442ProteinID:CDX69442.1GO:GO:0003674
GO:GO:0003824GO:GO:0004356GO:GO:0006542GO:GO:0006807GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00135415001InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_N_conserv_siteInterPro:Gln_synth_cat_domInterPro:Gln_synth_gly_rich_siteInterPro:IPR036651PFAM:PF00120PFAM:PF03951
ScanProsite:PS00180ScanProsite:PS00181PANTHER:PTHR20852PANTHER:PTHR20852:SF78MetaCyc:PWY-381MetaCyc:PWY-5675
MetaCyc:PWY-6549MetaCyc:PWY-6963MetaCyc:PWY-6964SMART:SM01230SUPFAM:SSF54368SUPFAM:SSF55931
UniParc:UPI0004EE8C5ASEG:seg::::
Description
BnaA10g17910D
Coordinates
chrLK031790:+:245245..247928
Molecular Weight (calculated)
38959.0 Da
IEP (calculated)
5.277
GRAVY (calculated)
-0.402
Length
356 amino acids
Sequence
(BLAST)
001: MLALADLINL DLSDSTEKII AEYIWIGGSG LDMRSKARTL PGPVKDPSEL PKWNYDGSST GQAPGSDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKIFSDPSVA AEETWYGIEQ EYTLLQKDIK WPVGWPVGGF PGPQGPYYCG AGADKAFGRD IVDSHYKACL YAGINVSGTN GEVMPGQWEF
201: QVGPTVGIAA ADQVWVARYI LERITELAGV VLSLDPKPIP GDWNGAGAHT NYSTKSMRED GGYEIIKKAI EKLGLRHKEH ISAYGEGNER RLTGKHETAD
301: INTFLWGVAN RGASIRVGRD TEQAGKGYFE DRRPASNMDP YTVTSMIAET TILWKP
Best Arabidopsis Sequence Match ( AT5G16570.1 )
(BLAST)
001: MSSLADLINL DLSDSTDQII AEYIWIGGSG LDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGDDSEV IIYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKIFEDPSVV AEETWYGIEQ EYTLLQKDIK WPVGWPVGGF PGPQGPYYCG VGADKAFGRD IVDSHYKACL YAGINVSGTN GEVMPGQWEF
201: QVGPTVGIAA ADQVWVARYI LERITELAGV VLSLDPKPIP GDWNGAGAHT NYSTKSMRED GGYEVIKKAI EKLGLRHKEH IAAYGEGNER RLTGKHETAD
301: INTFLWGVAN RGASIRVGRD TEQAGKGYFE DRRPASNMDP YTVTSMIAES TILWKP
Arabidopsis Description
GLN1-4Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178UB24]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.