CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85499	Canola	cytosol	99.72	99.72
Bra023573.1-P	Field mustard	cytosol	99.44	99.44
CDX69442	Canola	cytosol	96.63	96.63
CDY49656	Canola	cytosol	96.63	96.63
AT5G16570.1	Thale cress	cytosol	95.51	95.51
CDY52941	Canola	cytosol	88.76	88.76
PGSC0003DMT400034421	Potato	cytosol	87.92	88.42
CDY01727	Canola	cytosol	86.52	88.25
CDX74573	Canola	cytosol	88.2	88.2
CDY16439	Canola	cytosol	88.2	88.2
Solyc11g011380.1.1	Tomato	extracellular	87.36	87.85
VIT_01s0011g02200.t01	Wine grape	cytosol	86.52	86.52
Solyc05g051250.2.1	Tomato	unclear	86.52	86.52
PGSC0003DMT400037822	Potato	cytosol	86.24	86.24
KRH48674	Soybean	endoplasmic reticulum	86.24	86.24
KRH39031	Soybean	cytosol, nucleus	85.96	85.96
CDX95818	Canola	cytosol	83.99	84.46
CDX92165	Canola	cytosol	83.99	84.46
CDY68179	Canola	cytosol	82.3	82.77
CDY68590	Canola	cytosol	82.3	82.77
CDX75942	Canola	cytosol	79.49	79.72
CDY49672	Canola	cytosol	78.93	78.71
CDX93671	Canola	cytosol	78.93	78.71
CDX82343	Canola	cytosol	78.37	78.59
CDY49365	Canola	plastid	73.88	66.75
CDX74644	Canola	plastid	78.37	65.19
CDX84116	Canola	plastid	42.42	61.13
CDY27610	Canola	cytosol	33.99	57.89
CDY33684	Canola	plastid	78.37	57.06
CDY27650	Canola	mitochondrion	25.84	54.44
CDX98429	Canola	plastid	20.79	35.24

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:A0A078HLB2	UniProt:A0A078HLB2	EnsemblPlants:CDY38104	ProteinID:CDY38104	ProteinID:CDY38104.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524
GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016874	EnsemblPlantsGene:GSBRNA2T00065379001	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site
InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180
ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF58	MetaCyc:PWY-381	MetaCyc:PWY-5675	MetaCyc:PWY-6549
MetaCyc:PWY-6963	MetaCyc:PWY-6964	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI00019D33ED
SEG:seg	:	:	:	:	:

Description

BnaC02g06690DGlutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A078HLB2]

Coordinates

chrLK032416:+:144515..147155

Molecular Weight (calculated)

38974.9 Da

IEP (calculated)

5.140

GRAVY (calculated)

-0.431

Length

356 amino acids

Sequence
(BLAST)

001: MSALADLINL DLSDSSEKII AEYIWIGGSG LDMRSKARTL PGPVKDPSEL PKWNYDGSST GQAPGDDSEV IIYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKIFSDPTVA AEETWYGIEQ EYTLLQKDTK WPVGWPVGGF PGPQGPYYCG VGADKAFGRD IVDAHYKACL YAGINVSGTN GEVMPGQWEF
201: QVGPTVGIAA ADQVWVARYI LERITELAGV VLSLDPKPIP GDWNGAGAHT NYSTKSMRED GGYEIIKKAI EKLGLRHKEH IAAYGEGNER RLTGKHETAD
301: INTFLWGVAN RGASIRVGRD TEKDGKGYFE DRRPASNMDP YTVTSMVAET TILWKP

Best Arabidopsis Sequence Match ( AT5G16570.1 )
(BLAST)

001: MSSLADLINL DLSDSTDQII AEYIWIGGSG LDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGDDSEV IIYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKIFEDPSVV AEETWYGIEQ EYTLLQKDIK WPVGWPVGGF PGPQGPYYCG VGADKAFGRD IVDSHYKACL YAGINVSGTN GEVMPGQWEF
201: QVGPTVGIAA ADQVWVARYI LERITELAGV VLSLDPKPIP GDWNGAGAHT NYSTKSMRED GGYEVIKKAI EKLGLRHKEH IAAYGEGNER RLTGKHETAD
301: INTFLWGVAN RGASIRVGRD TEQAGKGYFE DRRPASNMDP YTVTSMIAES TILWKP

Arabidopsis Description

GLN1-4Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178UB24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.