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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY68179 Canola cytosol 100.0 100.0
Bra021276.1-P Field mustard cytosol 99.44 99.44
CDX92165 Canola cytosol 96.05 96.05
CDX95818 Canola cytosol 96.05 96.05
AT3G17820.1 Thale cress cytosol 92.94 92.94
CDX75942 Canola cytosol 90.68 90.42
CDX82343 Canola cytosol 89.83 89.58
Os02t0735200-02 Rice cytosol 85.03 84.55
CDX74573 Canola cytosol 84.75 84.27
KXG30808 Sorghum cytosol 84.75 84.27
CDY16439 Canola cytosol 84.46 83.99
CDY01727 Canola cytosol 82.77 83.95
Zm00001d051804_P001 Maize cytosol, extracellular, mitochondrion, plasma membrane 84.18 83.71
VIT_01s0011g02200.t01 Wine grape cytosol 84.18 83.71
TraesCS6A01G298100.2 Wheat cytosol 84.18 83.71
TraesCS6B01G327500.1 Wheat cytosol, golgi, plastid, unclear 83.9 83.43
CDY52941 Canola cytosol 83.9 83.43
CDY38104 Canola cytosol 82.77 82.3
CDY49656 Canola cytosol 82.77 82.3
CDY49672 Canola cytosol 82.77 82.07
CDX93671 Canola cytosol 82.77 82.07
CDX85499 Canola cytosol 82.49 82.02
CDX69442 Canola cytosol 81.92 81.46
Zm00001d017958_P002 Maize cytosol 82.49 79.35
HORVU6Hr1G074030.2 Barley cytosol, mitochondrion, plastid 84.18 73.4
Solyc12g041870.1.1 Tomato cytosol 72.6 71.59
CDY27610 Canola cytosol 38.42 65.07
CDY49365 Canola plastid 71.47 64.21
CDX74644 Canola plastid 75.42 62.38
CDY27650 Canola mitochondrion 29.66 62.13
CDX84116 Canola plastid 43.22 61.94
CDY33684 Canola plastid 75.42 54.6
CDX98429 Canola plastid 24.01 40.48
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2MapMan:25.1.5.1.1Gene3D:3.10.20.70
Gene3D:3.30.590.40GO:A0A078JMZ9UniProt:A0A078JMZ9ProteinID:CDY68179.1EnsemblPlants:CDY68590ProteinID:CDY68590
ProteinID:CDY68590.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004356GO:GO:0005488
GO:GO:0005524GO:GO:0006542GO:GO:0006807GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016874EnsemblPlantsGene:GSBRNA2T00075976001InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_N_conserv_siteInterPro:Gln_synth_cat_domInterPro:Gln_synth_gly_rich_siteInterPro:IPR036651PFAM:PF00120PFAM:PF03951
ScanProsite:PS00180ScanProsite:PS00181PANTHER:PTHR20852PANTHER:PTHR20852:SF59MetaCyc:PWY-381MetaCyc:PWY-5675
MetaCyc:PWY-6549MetaCyc:PWY-6963MetaCyc:PWY-6964SMART:SM01230SUPFAM:SSF54368SUPFAM:SSF55931
UniParc:UPI0004EF4A97SEG:seg::::
Description
BnaAnng27730DGlutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A078JMZ9]
Coordinates
chrLK037616:+:1594..3700
Molecular Weight (calculated)
38573.7 Da
IEP (calculated)
7.112
GRAVY (calculated)
-0.388
Length
354 amino acids
Sequence
(BLAST)
001: MSLLSDLVNL NLSDTTKQII AEYIWIGGSG MDIRSKARTL PGPVTDPSKL PKWNYDGSST GQAAGDDSEV ILYPQAIFRD PFRRGNNILV MCDAYTPAGN
101: PIPTNKRHNA AKIFSNSKVA SEEPWYGIEQ EYTLMQKGVN WPIGWPVGGF PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGISISGVN GEVMPGQWEF
201: QVGPVEGISA GDQVWIARFL LERITEISGV NVSFDPKPVP GDWNGAGAHC NYSTKTMRNT GGLAVIKKAI EKLQVKHKQH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG
Best Arabidopsis Sequence Match ( AT3G17820.1 )
(BLAST)
001: MSLLSDLVNL NLTDATGKII AEYIWIGGSG MDIRSKARTL PGPVTDPSKL PKWNYDGSST GQAAGEDSEV ILYPQAIFKD PFRKGNNILV MCDAYTPAGD
101: PIPTNKRHNA AKIFSHPDVA KEEPWYGIEQ EYTLMQKDVN WPIGWPVGGY PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGIGISGIN GEVMPGQWEF
201: QVGPVEGISS GDQVWVARYL LERITEISGV IVSFDPKPVP GDWNGAGAHC NYSTKTMRND GGLEVIKKAI GKLQLKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG
Arabidopsis Description
GLN1-3Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178VNQ6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.