Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g051250.2.1 | |
| Solyc11g011380.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48470.1 | Solyc05g051250.2.1 | AT5G37600.1 | 21798944 |
| AT1G48470.1 | Solyc11g011380.1.1 | AT5G37600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037457 | Potato | cytosol, plastid | 83.29 | 93.73 |
| VIT_01s0011g02200.t01 | Wine grape | cytosol | 77.99 | 78.65 |
| Os02t0735200-02 | Rice | cytosol | 76.6 | 77.25 |
| Solyc11g011380.1.1 | Tomato | extracellular | 75.77 | 76.84 |
| Zm00001d051804_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 76.04 | 76.69 |
| KXG30808 | Sorghum | cytosol | 75.77 | 76.4 |
| Solyc04g014510.2.1 | Tomato | cytosol, extracellular, plastid, unclear | 75.49 | 76.12 |
| Solyc05g051250.2.1 | Tomato | unclear | 75.21 | 75.84 |
| AT3G17820.1 | Thale cress | cytosol | 74.37 | 75.42 |
| TraesCS6B01G327500.1 | Wheat | cytosol, golgi, plastid, unclear | 74.65 | 75.28 |
| TraesCS6A01G298100.2 | Wheat | cytosol | 74.37 | 75.0 |
| CDX92165 | Canola | cytosol | 72.98 | 74.01 |
| CDX95818 | Canola | cytosol | 72.98 | 74.01 |
| Bra022247.1-P | Field mustard | cytosol | 72.98 | 74.01 |
| Zm00001d017958_P002 | Maize | cytosol | 75.49 | 73.64 |
| Bra018729.1-P | Field mustard | cytosol | 72.14 | 73.58 |
| AT1G48470.1 | Thale cress | cytosol | 71.59 | 72.8 |
| CDY68179 | Canola | cytosol | 71.59 | 72.6 |
| CDY68590 | Canola | cytosol | 71.59 | 72.6 |
| CDX93671 | Canola | cytosol | 72.14 | 72.55 |
| CDY49672 | Canola | cytosol | 72.14 | 72.55 |
| Bra021276.1-P | Field mustard | cytosol | 71.31 | 72.32 |
| CDX75942 | Canola | cytosol | 69.36 | 70.14 |
| CDX82343 | Canola | cytosol | 68.8 | 69.58 |
| Bra001686.1-P | Field mustard | endoplasmic reticulum, golgi | 66.85 | 67.8 |
| HORVU6Hr1G074030.2 | Barley | cytosol, mitochondrion, plastid | 75.77 | 67.0 |
| Solyc01g080280.2.1 | Tomato | plastid | 69.64 | 57.87 |
| Bra032257.1-P | Field mustard | cytosol | 27.3 | 57.65 |
| CDY27610 | Canola | cytosol | 30.64 | 52.63 |
| CDY27650 | Canola | mitochondrion | 22.84 | 48.52 |
| CDX98429 | Canola | plastid | 20.06 | 34.29 |
Protein Annotations
| KEGG:00220+6.3.1.2 | KEGG:00250+6.3.1.2 | KEGG:00630+6.3.1.2 | KEGG:00910+6.3.1.2 | Gene3D:3.10.20.70 | Gene3D:3.30.590.40 |
| MapMan:50.6.3 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004356 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006542 | GO:GO:0006807 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016874 | InterPro:Gln_synt_N | InterPro:Gln_synt_b-grasp | InterPro:Gln_synth/guanido_kin_cat_dom | InterPro:Gln_synth_N_conserv_site |
| InterPro:Gln_synth_cat_dom | InterPro:Gln_synth_gly_rich_site | InterPro:IPR036651 | UniProt:K4DEY2 | PFAM:PF00120 | PFAM:PF03951 |
| ScanProsite:PS00180 | ScanProsite:PS00181 | PANTHER:PTHR20852 | PANTHER:PTHR20852:SF59 | SMART:SM01230 | SUPFAM:SSF54368 |
| SUPFAM:SSF55931 | EnsemblPlantsGene:Solyc12g041870.1 | EnsemblPlants:Solyc12g041870.1.1 | UniParc:UPI000276A808 | : | : |
Description
Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:K4DEY2]
Coordinates
chr12:+:42395939..42399753
Molecular Weight (calculated)
39731.3 Da
IEP (calculated)
5.846
GRAVY (calculated)
-0.310
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLDLVNLD LSECHETNKS RIIAEYIWID GSDMNLRSKG RTLHGPVTSP SQIPNWNYDG SSTGQAPGED SEVILYPQAI YKDPFRGGNH ILVMCDAYTP
101: AGEPIPTNKR FNAVKIFSHP EVLAEIPWFG IEQEYTLLQK NLNWPLGWPI GGYRGPQGPY FCGVGAEKAF GRDIVNSHYK ACLYAGVNIG GINAEVMAGQ
201: WEFQVGPTVG ISPCDDLWVA RYILVRIAEA AGVIVSFDPK PVEGDCNGTG AHTNYSTKSM RADGGLEVIN KAIEKLGKRH KEHIVVYGVG NERRLTGEHE
301: TADINTFNFG IADRGASIRI GREMEKAGKG YLEDRRPFSN MDPYMVTFMI AETTILWKP
101: AGEPIPTNKR FNAVKIFSHP EVLAEIPWFG IEQEYTLLQK NLNWPLGWPI GGYRGPQGPY FCGVGAEKAF GRDIVNSHYK ACLYAGVNIG GINAEVMAGQ
201: WEFQVGPTVG ISPCDDLWVA RYILVRIAEA AGVIVSFDPK PVEGDCNGTG AHTNYSTKSM RADGGLEVIN KAIEKLGKRH KEHIVVYGVG NERRLTGEHE
301: TADINTFNFG IADRGASIRI GREMEKAGKG YLEDRRPFSN MDPYMVTFMI AETTILWKP
001: MSLLADLVNL DISDNSEKII AEYIWVGGSG MDMRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGQDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AEIFANPDVI AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS IGADKSFGRD IVDAHYKASL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEIWIARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMREE GGYEIIKKAI EKLGLRHKEH ISAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TLLWNP
101: PIPTNKRHAA AEIFANPDVI AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS IGADKSFGRD IVDAHYKASL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEIWIARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMREE GGYEIIKKAI EKLGLRHKEH ISAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TLLWNP
Arabidopsis Description
ATGSR2Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:F4ID91]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.