Factsheet for Bra018729.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra028132.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48470.1	Bra028132.1-P	AT5G37600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93671	Canola	cytosol	100.0	98.6
CDY49672	Canola	cytosol	100.0	98.6
AT1G48470.1	Thale cress	cytosol	94.89	94.62
Bra022247.1-P	Field mustard	cytosol	83.52	83.05
Bra021276.1-P	Field mustard	cytosol	82.67	82.2
VIT_01s0011g02200.t01	Wine grape	cytosol	80.68	79.78
Bra028132.1-P	Field mustard	cytosol	80.68	79.78
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	80.11	79.21
TraesCS6A01G298100.2	Wheat	cytosol	80.11	79.21
Os02t0735200-02	Rice	cytosol	80.11	79.21
Bra023573.1-P	Field mustard	cytosol	79.83	78.93
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	79.55	78.65
KXG30808	Sorghum	cytosol	79.55	78.65
Bra039756.1-P	Field mustard	cytosol	79.55	78.65
Bra008612.1-P	Field mustard	cytosol	79.55	78.65
Bra001686.1-P	Field mustard	endoplasmic reticulum, golgi	76.42	75.99
Bra032257.1-P	Field mustard	cytosol	36.65	75.88
Zm00001d017958_P002	Maize	cytosol	78.12	74.73
Solyc12g041870.1.1	Tomato	cytosol	73.58	72.14
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	80.11	69.46
Bra035529.1-P	Field mustard	plastid	72.16	59.35
Bra035392.1-P	Field mustard	plastid	71.88	59.11

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	EnsemblPlantsGene:Bra018729	EnsemblPlants:Bra018729.1	EnsemblPlants:Bra018729.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016874
InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site
InterPro:IPR036651	UniProt:M4DQD6	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181
PANTHER:PTHR20852	PANTHER:PTHR20852:SF58	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI000253ED52
SEG:seg	:	:	:	:	:

Description

AT1G48470 (E=2e-182) GLN1;5 | GLN1;5 (glutamine synthetase 1;5); glutamate-ammonia ligase

Coordinates

chrA06:-:2290011..2292266

Molecular Weight (calculated)

38691.0 Da

IEP (calculated)

6.879

GRAVY (calculated)

-0.451

Length

352 amino acids

Sequence
(BLAST)

001: MSPLSDLLNL NLDTKQIIAE YIWIGGSGMD IRSKGRTLPG PVSDPSKLPK WNYDGSSTNQ AAGDDSEVIL YPQAIFKDPF RKGNNILVMC DAYTPKGDPI
101: PTNNRHKAVK IFDHPNVKAE EPWFGIEQEY TLLKKDVKWP LGWPLGGFPG PQGPYYCAVG ADKAFGRDIV DGHYKACLYA GLSIGGANGE VMPGQWEFQI
201: SPTVGIGAGD QLWVARYILE RITEICGVIV SFDPKPIEGD WNGAAAHTNF STKSMRKEGG LDLIKKAIGK LEVKHKQHIA AYGEGNERRL TGKHETADIN
301: KFSWGVADRG ASVRVGRDTE KEGKGYFEDR RPSSNMDPYL VTSMIAETTI LG

Best Arabidopsis Sequence Match ( AT1G48470.1 )
(BLAST)

001: MTSPLSDLLN LDLSDTKKII AEYIWIGGSG MDIRSKARTL PGPVSNPTKL PKWNYDGSST DQAAGDDSEV ILYPQAIFKD PFRKGNNILV MCDAYRPAGD
101: PIPTNNRHKA VKIFDHPNVK AEEPWFGIEQ EYTLLKKDVK WPLGWPLGGF PGPQGPYYCA VGADKAFGRD IVDAHYKACL YSGLSIGGAN GEVMPGQWEF
201: QISPTVGIGA GDQLWVARYI LERITEICGV IVSFDPKPIQ GDWNGAAAHT NFSTKSMRKD GGLDLIKEAI KKLEVKHKQH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAD RGASVRVGRD TEKEGKGYFE DRRPSSNMDP YLVTSMIAET TIL

Arabidopsis Description

GLN1-5Glutamine synthetase cytosolic isozyme 1-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.