Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018729.1-P | Field mustard | cytosol | 94.62 | 94.89 |
| CDX93671 | Canola | cytosol | 94.62 | 93.56 |
| CDY49672 | Canola | cytosol | 94.62 | 93.56 |
| AT3G17820.1 | Thale cress | cytosol | 83.0 | 82.77 |
| VIT_01s0011g02200.t01 | Wine grape | cytosol | 80.74 | 80.06 |
| TraesCS6A01G298100.2 | Wheat | cytosol | 80.74 | 80.06 |
| TraesCS6B01G327500.1 | Wheat | cytosol, golgi, plastid, unclear | 80.45 | 79.78 |
| Os02t0735200-02 | Rice | cytosol | 80.17 | 79.49 |
| AT5G16570.1 | Thale cress | cytosol | 79.89 | 79.21 |
| KXG30808 | Sorghum | cytosol | 79.6 | 78.93 |
| Zm00001d051804_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 79.32 | 78.65 |
| AT5G37600.1 | Thale cress | cytosol | 79.32 | 78.65 |
| AT1G66200.3 | Thale cress | cytosol | 79.32 | 76.71 |
| Zm00001d017958_P002 | Maize | cytosol | 77.9 | 74.73 |
| Solyc12g041870.1.1 | Tomato | cytosol | 72.8 | 71.59 |
| HORVU6Hr1G074030.2 | Barley | cytosol, mitochondrion, plastid | 80.45 | 69.95 |
| AT5G35630.1 | Thale cress | plastid | 70.82 | 58.14 |
Protein Annotations
| KEGG:00220+6.3.1.2 | KEGG:00250+6.3.1.2 | KEGG:00630+6.3.1.2 | KEGG:00910+6.3.1.2 | MapMan:25.1.5.1.1 | Gene3D:3.10.20.70 |
| Gene3D:3.30.590.40 | EntrezGene:841268 | ProteinID:AAF79695.1 | ProteinID:AEE32297.1 | EMBL:AK118005 | ArrayExpress:AT1G48470 |
| EnsemblPlantsGene:AT1G48470 | RefSeq:AT1G48470 | TAIR:AT1G48470 | RefSeq:AT1G48470-TAIR-G | EnsemblPlants:AT1G48470.1 | TAIR:AT1G48470.1 |
| EMBL:AY085540 | Unigene:At.28083 | EMBL:BT006245 | Symbol:GLN1;5 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004356 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006542 | GO:GO:0006807 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009399 | GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0016874 | InterPro:Gln_synt_N | InterPro:Gln_synt_b-grasp | InterPro:Gln_synth/guanido_kin_cat_dom | InterPro:Gln_synth_N_conserv_site | InterPro:Gln_synth_cat_dom |
| InterPro:Gln_synth_gly_rich_site | InterPro:IPR036651 | RefSeq:NP_175280.1 | PFAM:PF00120 | PFAM:PF03951 | PO:PO:0000037 |
| PO:PO:0001016 | PO:PO:0001078 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00180 | ScanProsite:PS00181 | PANTHER:PTHR20852 | PANTHER:PTHR20852:SF58 | UniProt:Q8GXW5 |
| SMART:SM01230 | SUPFAM:SSF54368 | SUPFAM:SSF55931 | UniParc:UPI00000ADE63 | SEG:seg | : |
Description
GLN1-5Glutamine synthetase cytosolic isozyme 1-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXW5]
Coordinates
chr1:+:17913711..17916101
Molecular Weight (calculated)
38909.2 Da
IEP (calculated)
6.633
GRAVY (calculated)
-0.443
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSPLSDLLN LDLSDTKKII AEYIWIGGSG MDIRSKARTL PGPVSNPTKL PKWNYDGSST DQAAGDDSEV ILYPQAIFKD PFRKGNNILV MCDAYRPAGD
101: PIPTNNRHKA VKIFDHPNVK AEEPWFGIEQ EYTLLKKDVK WPLGWPLGGF PGPQGPYYCA VGADKAFGRD IVDAHYKACL YSGLSIGGAN GEVMPGQWEF
201: QISPTVGIGA GDQLWVARYI LERITEICGV IVSFDPKPIQ GDWNGAAAHT NFSTKSMRKD GGLDLIKEAI KKLEVKHKQH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAD RGASVRVGRD TEKEGKGYFE DRRPSSNMDP YLVTSMIAET TIL
101: PIPTNNRHKA VKIFDHPNVK AEEPWFGIEQ EYTLLKKDVK WPLGWPLGGF PGPQGPYYCA VGADKAFGRD IVDAHYKACL YSGLSIGGAN GEVMPGQWEF
201: QISPTVGIGA GDQLWVARYI LERITEICGV IVSFDPKPIQ GDWNGAAAHT NFSTKSMRKD GGLDLIKEAI KKLEVKHKQH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAD RGASVRVGRD TEKEGKGYFE DRRPSSNMDP YLVTSMIAET TIL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.