Factsheet for HORVU6Hr1G074030.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	86.21	98.31
TraesCS6A01G298100.2	Wheat	cytosol	85.96	98.03
Os02t0735200-02	Rice	cytosol	81.28	92.7
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	80.54	91.85
KXG30808	Sorghum	cytosol	80.54	91.85
Zm00001d017958_P002	Maize	cytosol	79.56	87.77
VIT_01s0011g02200.t01	Wine grape	cytosol	76.35	87.08
KRH48674	Soybean	endoplasmic reticulum	76.11	86.8
AT3G17820.1	Thale cress	cytosol	75.62	86.72
KRH39031	Soybean	cytosol, nucleus	75.62	86.24
CDX92165	Canola	cytosol	75.12	86.16
CDX95818	Canola	cytosol	75.12	86.16
Bra022247.1-P	Field mustard	cytosol	75.12	86.16
CDY68179	Canola	cytosol	73.4	84.18
CDY68590	Canola	cytosol	73.4	84.18
Bra021276.1-P	Field mustard	cytosol	73.15	83.9
HORVU4Hr1G007610.1	Barley	cytosol	72.17	80.94
CDX75942	Canola	cytosol	70.69	80.85
AT1G48470.1	Thale cress	cytosol	69.95	80.45
Bra018729.1-P	Field mustard	cytosol	69.46	80.11
CDX82343	Canola	cytosol	69.7	79.72
CDY49672	Canola	cytosol	69.46	78.99
CDX93671	Canola	cytosol	69.46	78.99
PGSC0003DMT400037457	Potato	cytosol, plastid	61.58	78.37
Bra001686.1-P	Field mustard	endoplasmic reticulum, golgi	67.49	77.4
HORVU4Hr1G066860.5	Barley	plasma membrane	72.17	76.5
Solyc12g041870.1.1	Tomato	cytosol	67.0	75.77
Bra032257.1-P	Field mustard	cytosol	25.37	60.59
PGSC0003DMT400036605	Potato	cytosol	12.56	57.95
CDY27610	Canola	cytosol	28.82	55.98
CDY27650	Canola	mitochondrion	21.92	52.66
CDX98429	Canola	plastid	18.72	36.19

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006542
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Gln_synt_N
InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	EnsemblPlantsGene:HORVU6Hr1G074030
EnsemblPlants:HORVU6Hr1G074030.2	InterPro:IPR036651	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181
PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	SEG:seg

Description

No Description!

Coordinates

chrchr6H:-:512159381..512163479

Molecular Weight (calculated)

44321.5 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.381

Length

406 amino acids

Sequence
(BLAST)

001: XTSFPSRSSP LPGRRHYIAA LPISPWPRIT SSITSLPALS RQPGSSIPPA MALLTDLLNL DLSGSTEKII AEYIWIGGSG MDLRSKARTL PGPVTDPSKL
101: PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRKGNNILV MCDCYTPAGE PIPTNKRYNA AKIFSNPDVA KEEPWYGIEQ EYTLLQKDIN WPLGWPVGGF
201: PGPQGPYYCG IGADKSFGRD IVDSHYKACL FAGVNISGIN GEVMPGQWEF QVGPTVGISA GDQVWVARYI LERITEIAGV VVTFDPKPIP GDWNGAGAHT
301: NYSTESMRND GGFKVIVDAV EKLKLKHKEH IAAYGEGNER RLTGKHETAD INTFSWGVAN RGASVRVGRE TEQNGKGYFE DRRPASNMDP YVVTSMIAET
401: TILWKP

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.