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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX82343 Canola cytosol 98.59 98.59
CDX92165 Canola cytosol 91.27 91.53
CDX95818 Canola cytosol 91.27 91.53
CDY68590 Canola cytosol 90.42 90.68
CDY68179 Canola cytosol 90.42 90.68
AT3G17820.1 Thale cress cytosol 89.3 89.55
Bra001686.1-P Field mustard endoplasmic reticulum, golgi 86.48 86.72
CDX74573 Canola cytosol 81.13 80.9
KXG30808 Sorghum cytosol 81.13 80.9
Zm00001d051804_P001 Maize cytosol, extracellular, mitochondrion, plasma membrane 80.85 80.62
VIT_01s0011g02200.t01 Wine grape cytosol 80.85 80.62
TraesCS6A01G298100.2 Wheat cytosol 80.85 80.62
Os02t0735200-02 Rice cytosol 80.85 80.62
CDY01727 Canola cytosol 79.15 80.52
TraesCS6B01G327500.1 Wheat cytosol, golgi, plastid, unclear 80.56 80.34
CDY49672 Canola cytosol 80.0 79.55
CDX93671 Canola cytosol 80.0 79.55
CDY16439 Canola cytosol 79.72 79.49
CDY38104 Canola cytosol 79.72 79.49
CDY52941 Canola cytosol 79.72 79.49
CDY49656 Canola cytosol 79.44 79.21
CDX85499 Canola cytosol 79.44 79.21
CDX69442 Canola cytosol 78.87 78.65
Zm00001d017958_P002 Maize cytosol 79.44 76.63
HORVU6Hr1G074030.2 Barley cytosol, mitochondrion, plastid 80.85 70.69
Solyc12g041870.1.1 Tomato cytosol 70.14 69.36
CDY27610 Canola cytosol 36.06 61.24
CDY49365 Canola plastid 67.89 61.17
CDX84116 Canola plastid 41.69 59.92
CDX74644 Canola plastid 71.27 59.11
CDY27650 Canola mitochondrion 27.61 57.99
CDY33684 Canola plastid 71.27 51.74
CDX98429 Canola plastid 21.41 36.19
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2MapMan:25.1.5.1.1Gene3D:3.10.20.70
Gene3D:3.30.590.40GO:A0A078CGN9EnsemblPlants:CDX75942ProteinID:CDX75942ProteinID:CDX75942.1GO:GO:0003674
GO:GO:0003824GO:GO:0004356GO:GO:0006542GO:GO:0006807GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00123970001InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_N_conserv_siteInterPro:Gln_synth_cat_domInterPro:IPR036651PFAM:PF00120PFAM:PF03951ScanProsite:PS00180
PANTHER:PTHR20852PANTHER:PTHR20852:SF59MetaCyc:PWY-381MetaCyc:PWY-5675MetaCyc:PWY-6549MetaCyc:PWY-6963
MetaCyc:PWY-6964SMART:SM01230SUPFAM:SSF54368SUPFAM:SSF55931UniParc:UPI0004EEC702SEG:seg
Description
BnaC03g40250D
Coordinates
chrLK031805:+:2062784..2066067
Molecular Weight (calculated)
38788.1 Da
IEP (calculated)
7.195
GRAVY (calculated)
-0.338
Length
355 amino acids
Sequence
(BLAST)
001: MSLLSDLVNL NLSDSTKQII AEYIWIGGSG MDIRSKARTL PGPVSDPSKL PKWNYDGSST GQASGDNSEV ILYPQAIFRD PFRRGDNILV MCDAYTPAGD
101: PIPTNKRHKA AKIFSHPNVA KEVPWYGIEQ EYTLMQKGMN WPIGWPVGGF PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGIGISGVN GEVMPGQWEF
201: QVGPVEGISS GDQVWVARYL LERITEISGV NVSFDPKPVP VSVSLPHSLN TLFITKSMRN NGGLAVIKNA IEKLQVKHKE HIAAYGEGNE RRLTGKHETA
301: DINTFSWGVA NRGASVRVGR DTEKEGKGYF EDRRPASNMD PYVVTSMIAE TTILG
Best Arabidopsis Sequence Match ( AT1G66200.1 )
(BLAST)
001: MSLLADLVNL DISDNSEKII AEYIWVGGSG MDMRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGQDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AEIFANPDVI AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS IGADKSFGRD IVDAHYKASL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEIWIARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMREE GGYEIIKKAI EKLGLRHKEH ISAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TLLWNP
Arabidopsis Description
ATGSR2Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:F4ID91]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.