CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35630.1	CDY32970	AT5G42980.1	15352244
AT5G35630.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035392.1-P	Field mustard	plastid	100.0	100.0
CDY49365	Canola	plastid	89.95	97.72
CDX84116	Canola	plastid	55.14	95.55
AT5G35630.1	Thale cress	plastid	92.99	92.56
CDY33684	Canola	plastid	100.0	87.53
GSMUA_Achr9P17480_001	Banana	cytosol	72.43	87.08
Solyc01g080280.2.1	Tomato	plastid	86.22	85.42
PGSC0003DMT400011133	Potato	cytosol	85.98	85.19
VIT_07s0104g00610.t01	Wine grape	plastid	84.11	83.14
VIT_05s0020g02480.t01	Wine grape	plastid	83.88	83.1
GSMUA_Achr3P09120_001	Banana	mitochondrion	76.87	81.44
CDY52941	Canola	cytosol	65.89	79.21
CDY16439	Canola	cytosol	65.89	79.21
CDY49656	Canola	cytosol	65.65	78.93
Os04t0659100-01	Rice	plastid	78.74	78.74
CDX74573	Canola	cytosol	65.19	78.37
CDY38104	Canola	cytosol	65.19	78.37
CDX69442	Canola	cytosol	65.19	78.37
CDX85499	Canola	cytosol	64.95	78.09
CDY01727	Canola	cytosol	63.32	77.65
TraesCS2B01G528300.1	Wheat	plastid	76.64	77.54
TraesCS2D01G500600.1	Wheat	plastid	77.34	77.52
TraesCS2A01G500400.1	Wheat	plastid	77.34	77.52
KXG27313	Sorghum	plastid	78.04	77.14
CDX92165	Canola	cytosol	62.85	75.99
CDX95818	Canola	cytosol	62.85	75.99
CDY68590	Canola	cytosol	62.38	75.42
CDY68179	Canola	cytosol	62.38	75.42
CDX75942	Canola	cytosol	59.11	71.27
CDX93671	Canola	cytosol	59.11	70.87
CDY49672	Canola	cytosol	59.11	70.87
CDX82343	Canola	cytosol	58.64	70.7
CDY27610	Canola	cytosol	25.93	53.11
KRH25519	Soybean	plastid	22.9	51.58
CDY27650	Canola	mitochondrion	20.09	50.89
CDX98429	Canola	plastid	16.36	33.33

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.2	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:A0A078CET5	unigene:Bna.2374	ProteinID:CAB72423.1	EnsemblPlants:CDX74644	ProteinID:CDX74644
ProteinID:CDX74644.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006542
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016874	EnsemblPlantsGene:GSBRNA2T00114639001	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	PFAM:PF00120	PFAM:PF03951
ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF53	MetaCyc:PWY-381	MetaCyc:PWY-5675
MetaCyc:PWY-6549	MetaCyc:PWY-6963	MetaCyc:PWY-6964	UniProt:Q42624	SMART:SM01230	SUPFAM:SSF54368
SUPFAM:SSF55931	UniParc:UPI000012B721	SEG:seg	:	:	:

Description

BnaA04g07450DGlutamine synthetase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42624]

Coordinates

chrLK031801:-:2453529..2456677

Molecular Weight (calculated)

47347.1 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.440

Length

428 amino acids

Sequence
(BLAST)

001: MAQILAASPT CQMRLTKPSS IASSKLWNSV VLKQKKQSSS KVRSFKVMAL QSDNSTINRV ESLLNLDTKP FTDRIIAEYI WIGGSGIDLR SKSRTLEKPV
101: EDPSELPKWN YDGSSTGQAP GEDSEVILYP QAIFRDPFRG GNNILVICDT YTPAGEPIPT NKRARAAEIF SNKKVNEEIP WFGIEQEYTL LQPNVNWPLG
201: WPVGAYPGPQ GPYYCGVGAE KSWGRDISDA HYKACLYAGI NISGTNGEVM PGQWEFQVGP SVGIEAGDHV WCARYLLERI TEQAGVVLTL DPKPIEGDWN
301: GAGCHTNYST KSMREDGGFE VIKKAILNLS LRHMEHISAY GEGNERRLTG KHETASIDQF SWGVANRGCS IRVGRDTEKK GKGYLEDRRP ASNMDPYIVT
401: SLLAETTLLW EPTLEAEALA AQKLSLKV

Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)

001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV

Arabidopsis Description

GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.