Factsheet for Solyc01g080280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011133	Potato	cytosol	98.15	98.15
GSMUA_Achr9P17480_001	Banana	cytosol	72.45	87.92
Bra035392.1-P	Field mustard	plastid	85.42	86.22
CDX74644	Canola	plastid	85.42	86.22
Bra035529.1-P	Field mustard	plastid	84.95	85.75
VIT_07s0104g00610.t01	Wine grape	plastid	85.88	85.68
AT5G35630.1	Thale cress	plastid	85.19	85.58
CDY49365	Canola	plastid	77.55	85.03
VIT_05s0020g02480.t01	Wine grape	plastid	84.72	84.72
GSMUA_Achr3P09120_001	Banana	mitochondrion	78.01	83.42
Os04t0659100-01	Rice	plastid	79.63	80.37
CDX84116	Canola	plastid	45.6	79.76
Solyc04g014510.2.1	Tomato	cytosol, extracellular, plastid, unclear	65.05	78.93
TraesCS2A01G500400.1	Wheat	plastid	78.01	78.92
TraesCS2D01G500600.1	Wheat	plastid	78.01	78.92
TraesCS2B01G528300.1	Wheat	plastid	77.08	78.72
KXG27313	Sorghum	plastid	78.7	78.52
Solyc05g051250.2.1	Tomato	unclear	64.35	78.09
Solyc11g011380.1.1	Tomato	extracellular	63.89	77.97
CDY33684	Canola	plastid	85.42	75.46
Solyc12g041870.1.1	Tomato	cytosol	57.87	69.64
KRH25519	Soybean	plastid	24.07	54.74

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.2	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0005840	GO:GO:0006542	GO:GO:0006807	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009735
GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016874	GO:GO:0022626	GO:GO:0046686
GO:GO:0048046	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom
InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	UniProt:K4AXS2	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180
ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF53	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931
EnsemblPlantsGene:Solyc01g080280.2	EnsemblPlants:Solyc01g080280.2.1	UniParc:UPI0002762339	SEG:seg	:	:

Description

Glutamine synthetase, chloroplastic/mitochondrial [Source:Projected from Arabidopsis thaliana (AT5G35630) UniProtKB/Swiss-Prot;Acc:Q43127]

Coordinates

chr1:+:79528933..79534220

Molecular Weight (calculated)

47542.3 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.418

Length

432 amino acids

Sequence
(BLAST)

001: MAQILAPSAQ WQMRMTKSST DASPLTSKMW SSVVLKQNKR HALKSSAKFR VFALQSDNGT VNRVEQLLNL DVTPYTDKII AEYIWIGGTG IDMRSKSRTI
101: SKPVKDASEL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRGGNNILV ICDAYTPAGE PIPTNKRHKA AQIFSDPKVA AQVPWFGIEQ EYTLLQPNVN
201: WPLGWPVGGY PGPQGPYYCG AGAEKSFGRD ISDAHYKACL YAGINISGTN GEVMPGQWEF QVGPSVGIEG GDHIWCARYL LERITEQAGV VLSLDPKPIE
301: GDWNGAGCHT NYSTLSMREE GGFEVIKKAI LNLSLRHKEH ISAYGEGNER RLTGKHETAS IDQFSWGVAN RGCSIRVGRD TEKEGKGYLE DRRPASNMDP
401: YVVTGLLAET TILWEPTLEA EALAAQKISL KV

Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)

001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV

Arabidopsis Description

GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.