Factsheet for Solyc05g051250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096350.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37600.1	Solyc01g096350.2.1	AT2G46700.1	16472779

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037822	Potato	cytosol	97.75	97.75
Solyc11g011380.1.1	Tomato	extracellular	89.04	89.55
CDX74573	Canola	cytosol	87.92	87.92
AT5G37600.1	Thale cress	cytosol	87.64	87.64
CDY01727	Canola	cytosol	85.67	87.39
VIT_01s0011g02200.t01	Wine grape	cytosol	87.08	87.08
Solyc04g014510.2.1	Tomato	cytosol, extracellular, plastid, unclear	87.08	87.08
CDY49656	Canola	cytosol	87.08	87.08
CDX69442	Canola	cytosol	87.08	87.08
Bra008612.1-P	Field mustard	cytosol	86.8	86.8
CDY38104	Canola	cytosol	86.52	86.52
Bra028132.1-P	Field mustard	cytosol	86.52	86.52
CDX85499	Canola	cytosol	86.24	86.24
Bra023573.1-P	Field mustard	cytosol	86.24	86.24
Bra039756.1-P	Field mustard	cytosol	85.96	85.96
CDY16439	Canola	cytosol	85.96	85.96
CDY52941	Canola	cytosol	85.96	85.96
AT5G16570.1	Thale cress	cytosol	85.39	85.39
AT1G66200.3	Thale cress	cytosol	85.11	83.01
Solyc12g041870.1.1	Tomato	cytosol	75.84	75.21
Solyc01g080280.2.1	Tomato	plastid	78.09	64.35

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488
GO:GO:0005524	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site
InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	UniProt:K4C1F6	PFAM:PF00120	PFAM:PF03951
ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368
SUPFAM:SSF55931	EnsemblPlantsGene:Solyc05g051250.2	EnsemblPlants:Solyc05g051250.2.1	UniParc:UPI000276743A	:	:

Description

Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:K4C1F6]

Coordinates

chr5:-:61531469..61534785

Molecular Weight (calculated)

38955.0 Da

IEP (calculated)

5.999

GRAVY (calculated)

-0.401

Length

356 amino acids

Sequence
(BLAST)

001: MSMISDLINL NLSECTKKII AEYIWIGGSG TDLRSKARTL SGPVKDPSEL PKWNYDGSST GQASGEDSEV ILYPQAIFKD PFRRGDNILV MCDAYTPAGN
101: PIPTNKRHNA AKIFSNPVVA AEEPWYGIEQ EYTLLQKEVN WPLGWPIGGF PGPQGPYYCG IGAANAFGRD IVDSHYKACL YAGINISGVN GEVMPGQWEF
201: QVGPAVGISA GDEVWAARYI LERIAEVAGV VVSFDPKPIP GDWNGAGAHA NYSTKSMRED GGYEIIKKAI EKLGLRHKEH IAAYGEGNER RLTGKHETAD
301: INSFKWGVAN RGCSVRVGRD TEKAGKGYFE DRRPASNMDP YTVTSMIAET TIVWKP

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.