Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74573 | Canola | cytosol | 94.38 | 94.38 |
| CDY01727 | Canola | cytosol | 92.42 | 94.27 |
| Bra028132.1-P | Field mustard | cytosol | 93.54 | 93.54 |
| AT1G66200.3 | Thale cress | cytosol | 92.13 | 89.86 |
| PGSC0003DMT400034421 | Potato | cytosol | 89.04 | 89.55 |
| Solyc11g011380.1.1 | Tomato | extracellular | 89.04 | 89.55 |
| AT5G16570.1 | Thale cress | cytosol | 88.48 | 88.48 |
| KRH48674 | Soybean | endoplasmic reticulum | 88.48 | 88.48 |
| VIT_01s0011g02200.t01 | Wine grape | cytosol | 88.2 | 88.2 |
| KRH39031 | Soybean | cytosol, nucleus | 87.64 | 87.64 |
| Solyc05g051250.2.1 | Tomato | unclear | 87.64 | 87.64 |
| PGSC0003DMT400037822 | Potato | cytosol | 87.36 | 87.36 |
| AT3G17820.1 | Thale cress | cytosol | 85.67 | 86.16 |
| AT1G48470.1 | Thale cress | cytosol | 78.65 | 79.32 |
| AT5G35630.1 | Thale cress | plastid | 76.97 | 63.72 |
Protein Annotations
| KEGG:00220+6.3.1.2 | KEGG:00250+6.3.1.2 | KEGG:00630+6.3.1.2 | KEGG:00910+6.3.1.2 | MapMan:25.1.5.1.1 | Gene3D:3.10.20.70 |
| Gene3D:3.30.590.40 | EntrezGene:833738 | ProteinID:AED94209.1 | EMBL:AF419608 | EMBL:AF428386 | EMBL:AK222005 |
| ArrayExpress:AT5G37600 | EnsemblPlantsGene:AT5G37600 | RefSeq:AT5G37600 | TAIR:AT5G37600 | RefSeq:AT5G37600-TAIR-G | EnsemblPlants:AT5G37600.1 |
| TAIR:AT5G37600.1 | Symbol:ATGSR1 | EMBL:AY079113 | Unigene:At.7003 | ProteinID:BAB08306.1 | EMBL:BT000753 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004356 | GO:GO:0005488 | GO:GO:0005507 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006542 | GO:GO:0006807 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009399 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0010150 | GO:GO:0016020 | GO:GO:0016874 | GO:GO:0022626 | GO:GO:0030312 |
| GO:GO:0042128 | InterPro:Gln_synt_N | InterPro:Gln_synt_b-grasp | InterPro:Gln_synth/guanido_kin_cat_dom | InterPro:Gln_synth_N_conserv_site | InterPro:Gln_synth_cat_dom |
| InterPro:Gln_synth_gly_rich_site | InterPro:IPR036651 | RefSeq:NP_198576.1 | PFAM:PF00120 | PFAM:PF03951 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00180 | ScanProsite:PS00181 | PANTHER:PTHR20852 | PANTHER:PTHR20852:SF58 | UniProt:Q56WN1 |
| SMART:SM01230 | SUPFAM:SSF54368 | SUPFAM:SSF55931 | UniParc:UPI00000AC48D | SEG:seg | : |
Description
GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
Coordinates
chr5:-:14933286..14935885
Molecular Weight (calculated)
39117.2 Da
IEP (calculated)
5.120
GRAVY (calculated)
-0.388
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.