Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37600.1 | CDY27530 | AT2G46700.1 | 16472779 |
| AT5G37600.1 | CDY48019 | AT2G46700.1 | 16472779 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74573 | Canola | cytosol | 98.57 | 96.63 |
| AT5G37600.1 | Thale cress | cytosol | 94.27 | 92.42 |
| CDY52941 | Canola | cytosol | 93.41 | 91.57 |
| CDY16439 | Canola | cytosol | 93.12 | 91.29 |
| Solyc11g011380.1.1 | Tomato | extracellular | 88.83 | 87.57 |
| PGSC0003DMT400034421 | Potato | cytosol | 88.54 | 87.29 |
| CDX85499 | Canola | cytosol | 88.25 | 86.52 |
| KRH48674 | Soybean | endoplasmic reticulum | 88.25 | 86.52 |
| CDY38104 | Canola | cytosol | 88.25 | 86.52 |
| KRH39031 | Soybean | cytosol, nucleus | 87.97 | 86.24 |
| CDY49656 | Canola | cytosol | 87.97 | 86.24 |
| CDX69442 | Canola | cytosol | 87.68 | 85.96 |
| PGSC0003DMT400037822 | Potato | cytosol | 87.68 | 85.96 |
| VIT_01s0011g02200.t01 | Wine grape | cytosol | 87.39 | 85.67 |
| Solyc05g051250.2.1 | Tomato | unclear | 87.39 | 85.67 |
| CDX95818 | Canola | cytosol | 85.1 | 83.9 |
| CDX92165 | Canola | cytosol | 85.1 | 83.9 |
| CDY68179 | Canola | cytosol | 83.95 | 82.77 |
| CDY68590 | Canola | cytosol | 83.95 | 82.77 |
| CDX75942 | Canola | cytosol | 80.52 | 79.15 |
| CDX82343 | Canola | cytosol | 80.23 | 78.87 |
| CDY49672 | Canola | cytosol | 79.94 | 78.15 |
| CDX93671 | Canola | cytosol | 79.94 | 78.15 |
| CDY49365 | Canola | plastid | 72.78 | 64.47 |
| CDX74644 | Canola | plastid | 77.65 | 63.32 |
| CDX84116 | Canola | plastid | 43.55 | 61.54 |
| CDY33684 | Canola | plastid | 77.65 | 55.42 |
| CDY27610 | Canola | cytosol | 31.81 | 53.11 |
| CDY27650 | Canola | mitochondrion | 25.21 | 52.07 |
| CDX98429 | Canola | plastid | 20.92 | 34.76 |
Protein Annotations
| KEGG:00220+6.3.1.2 | KEGG:00250+6.3.1.2 | KEGG:00630+6.3.1.2 | KEGG:00910+6.3.1.2 | MapMan:25.1.5.1.1 | Gene3D:3.10.20.70 |
| Gene3D:3.30.590.40 | GO:A0A078EKN6 | EnsemblPlants:CDY01727 | ProteinID:CDY01727 | ProteinID:CDY01727.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004356 | GO:GO:0006542 | GO:GO:0006807 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00112825001 | InterPro:Gln_synt_N | InterPro:Gln_synt_b-grasp | InterPro:Gln_synth/guanido_kin_cat_dom |
| InterPro:Gln_synth_N_conserv_site | InterPro:Gln_synth_cat_dom | InterPro:Gln_synth_gly_rich_site | InterPro:IPR036651 | PFAM:PF00120 | PFAM:PF03951 |
| ScanProsite:PS00180 | ScanProsite:PS00181 | PANTHER:PTHR20852 | PANTHER:PTHR20852:SF58 | MetaCyc:PWY-381 | MetaCyc:PWY-5675 |
| MetaCyc:PWY-6549 | MetaCyc:PWY-6963 | MetaCyc:PWY-6964 | SMART:SM01230 | SUPFAM:SSF54368 | SUPFAM:SSF55931 |
| UniParc:UPI0004EEF3A4 | : | : | : | : | : |
Description
BnaC04g30250D
Coordinates
chrLK031928:+:904008..906838
Molecular Weight (calculated)
38327.3 Da
IEP (calculated)
5.259
GRAVY (calculated)
-0.391
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLTDLVNL NLSETTDKII AEYIWVGGSG MDMRSKARTL PGPVSDPSEL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSHPDVV AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGF PGPQGPYYCS VGADKSFGRD IVDAHYKACL YAGITISGIN GEVMPGQWEF
201: QVGPAVGISA GDEIWRITEV AGVVVSFDPK PIPGDWNGAG AHCNYSTKSM REDGGYEIIK KAIDKLGMRH KEHIAAYGEG NERRLTGHHE TADINTFLWG
301: VANRGASIRV GRDTEKEGKG YFEDRRPASN MDPYIVTSMI AETTILWKP
101: PIPTNKRHAA AKVFSHPDVV AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGF PGPQGPYYCS VGADKSFGRD IVDAHYKACL YAGITISGIN GEVMPGQWEF
201: QVGPAVGISA GDEIWRITEV AGVVVSFDPK PIPGDWNGAG AHCNYSTKSM REDGGYEIIK KAIDKLGMRH KEHIAAYGEG NERRLTGHHE TADINTFLWG
301: VANRGASIRV GRDTEKEGKG YFEDRRPASN MDPYIVTSMI AETTILWKP
001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
Arabidopsis Description
GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.