Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g02200.t01 | |
| VIT_15s0048g02840.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48470.1 | VIT_01s0011g02200.t01 | AT5G37600.1 | 21798944 |
| AT5G37600.1 | VIT_15s0048g02840.t01 | AT2G46700.1 | 16472779 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0006g00350.t01 | Wine grape | cytosol | 91.57 | 91.57 |
| Os02t0735200-02 | Rice | cytosol | 89.61 | 89.61 |
| Solyc04g014510.2.1 | Tomato | cytosol, extracellular, plastid, unclear | 89.04 | 89.04 |
| KRH48674 | Soybean | endoplasmic reticulum | 89.04 | 89.04 |
| CDX74573 | Canola | cytosol | 88.76 | 88.76 |
| KXG30808 | Sorghum | cytosol | 88.76 | 88.76 |
| KRH39031 | Soybean | cytosol, nucleus | 88.48 | 88.48 |
| PGSC0003DMT400060733 | Potato | cytosol | 88.48 | 88.48 |
| PGSC0003DMT400034421 | Potato | cytosol | 87.92 | 88.42 |
| AT5G37600.1 | Thale cress | cytosol | 88.2 | 88.2 |
| Solyc11g011380.1.1 | Tomato | extracellular | 87.64 | 88.14 |
| Zm00001d051804_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 87.92 | 87.92 |
| Bra028132.1-P | Field mustard | cytosol | 87.64 | 87.64 |
| Bra039756.1-P | Field mustard | cytosol | 87.64 | 87.64 |
| CDY52941 | Canola | cytosol | 87.64 | 87.64 |
| CDY16439 | Canola | cytosol | 87.64 | 87.64 |
| CDY01727 | Canola | cytosol | 85.67 | 87.39 |
| Solyc05g051250.2.1 | Tomato | unclear | 87.08 | 87.08 |
| CDY49656 | Canola | cytosol | 87.08 | 87.08 |
| Bra008612.1-P | Field mustard | cytosol | 87.08 | 87.08 |
| Bra023573.1-P | Field mustard | cytosol | 87.08 | 87.08 |
| CDX85499 | Canola | cytosol | 86.8 | 86.8 |
| CDX69442 | Canola | cytosol | 86.8 | 86.8 |
| CDY38104 | Canola | cytosol | 86.52 | 86.52 |
| PGSC0003DMT400037822 | Potato | cytosol | 86.52 | 86.52 |
| TraesCS6A01G298100.2 | Wheat | cytosol | 86.24 | 86.24 |
| AT5G16570.1 | Thale cress | cytosol | 86.24 | 86.24 |
| AT1G66200.3 | Thale cress | cytosol | 88.2 | 86.03 |
| TraesCS6B01G327500.1 | Wheat | cytosol, golgi, plastid, unclear | 85.96 | 85.96 |
| AT3G17820.1 | Thale cress | cytosol | 85.39 | 85.88 |
| Bra022247.1-P | Field mustard | cytosol | 84.83 | 85.31 |
| CDX92165 | Canola | cytosol | 84.83 | 85.31 |
| CDX95818 | Canola | cytosol | 84.83 | 85.31 |
| Zm00001d017958_P002 | Maize | cytosol | 87.36 | 84.51 |
| CDY68179 | Canola | cytosol | 83.71 | 84.18 |
| CDY68590 | Canola | cytosol | 83.71 | 84.18 |
| Bra021276.1-P | Field mustard | cytosol | 83.43 | 83.9 |
| PGSC0003DMT400037457 | Potato | cytosol, plastid | 73.31 | 81.82 |
| CDX75942 | Canola | cytosol | 80.62 | 80.85 |
| AT1G48470.1 | Thale cress | cytosol | 80.06 | 80.74 |
| Bra018729.1-P | Field mustard | cytosol | 79.78 | 80.68 |
| CDX82343 | Canola | cytosol | 79.78 | 80.0 |
| CDX93671 | Canola | cytosol | 79.78 | 79.55 |
| CDY49672 | Canola | cytosol | 79.78 | 79.55 |
| VIT_17s0000g01910.t01 | Wine grape | cytosol | 83.15 | 78.1 |
| Solyc12g041870.1.1 | Tomato | cytosol | 78.65 | 77.99 |
| Bra001686.1-P | Field mustard | endoplasmic reticulum, golgi | 76.69 | 77.12 |
| HORVU6Hr1G074030.2 | Barley | cytosol, mitochondrion, plastid | 87.08 | 76.35 |
| VIT_07s0104g00610.t01 | Wine grape | plastid | 79.78 | 65.59 |
| VIT_10s0042g01000.t01 | Wine grape | cytosol | 9.83 | 64.81 |
| Bra032257.1-P | Field mustard | cytosol | 30.9 | 64.71 |
| VIT_05s0020g02480.t01 | Wine grape | plastid | 78.09 | 64.35 |
| PGSC0003DMT400036605 | Potato | cytosol | 14.33 | 57.95 |
| CDY27610 | Canola | cytosol | 32.87 | 55.98 |
| CDY27650 | Canola | mitochondrion | 25.28 | 53.25 |
| CDX98429 | Canola | plastid | 21.07 | 35.71 |
Protein Annotations
| KEGG:00220+6.3.1.2 | KEGG:00250+6.3.1.2 | KEGG:00630+6.3.1.2 | KEGG:00910+6.3.1.2 | EntrezGene:100249247 | wikigene:100249247 |
| MapMan:25.1.5.1.1 | Gene3D:3.10.20.70 | Gene3D:3.30.590.40 | UniProt:A5AP38 | EMBL:AJ318053 | EMBL:AM431207 |
| ProteinID:CAC39216 | ProteinID:CAC39216.1 | ProteinID:CAN62668 | ProteinID:CAN62668.1 | ProteinID:CBI27134 | ProteinID:CBI27134.3 |
| EMBL:FN595752 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004356 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006542 |
| GO:GO:0006807 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016874 |
| EntrezGene:GS | wikigene:GS | InterPro:Gln_synt_N | InterPro:Gln_synt_b-grasp | InterPro:Gln_synth/guanido_kin_cat_dom | InterPro:Gln_synth_N_conserv_site |
| InterPro:Gln_synth_cat_dom | InterPro:Gln_synth_gly_rich_site | InterPro:IPR036651 | PFAM:PF00120 | PFAM:PF03951 | ScanProsite:PS00180 |
| ScanProsite:PS00181 | PANTHER:PTHR20852 | PANTHER:PTHR20852:SF59 | SMART:SM01230 | SUPFAM:SSF54368 | SUPFAM:SSF55931 |
| TIGR:TC60125 | UniParc:UPI000151EF57 | ArrayExpress:VIT_01s0011g02200 | EnsemblPlantsGene:VIT_01s0011g02200 | EnsemblPlants:VIT_01s0011g02200.t01 | unigene:Vvi.11261 |
| unigene:Vvi.15 | RefSeq:XP_010652433.1 | : | : | : | : |
Description
Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A5AP38]
Coordinates
chr1:+:1923726..1928025
Molecular Weight (calculated)
39026.0 Da
IEP (calculated)
5.274
GRAVY (calculated)
-0.419
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLADLQNI NLSDSTEKII AEYIWIGGSG NDLRSKARTL SGPVTGPAQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRGGDNILV MCDAYTPGGE
101: PIPTNKRFNA AKIFSHPEVT AEEPWYGIEQ EYTLLQKDVN WPLGWPVGGF PGPQGPYYCG IGADKAFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA GDELWVARYI LERITEIAGV VVSFDPKPIK GDWNGAGAHT NYSTKSMRNT GGYDVIKKAI EKLGLRHKEH ISAYGEGNER RLTGRHETAD
301: INTFCWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILWKP
101: PIPTNKRFNA AKIFSHPEVT AEEPWYGIEQ EYTLLQKDVN WPLGWPVGGF PGPQGPYYCG IGADKAFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA GDELWVARYI LERITEIAGV VVSFDPKPIK GDWNGAGAHT NYSTKSMRNT GGYDVIKKAI EKLGLRHKEH ISAYGEGNER RLTGRHETAD
301: INTFCWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILWKP
001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
Arabidopsis Description
GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.