Factsheet for Bra021276.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68590	Canola	cytosol	99.44	99.44
CDY68179	Canola	cytosol	99.44	99.44
Bra022247.1-P	Field mustard	cytosol	95.48	95.48
AT3G17820.1	Thale cress	cytosol	92.66	92.66
Bra001686.1-P	Field mustard	endoplasmic reticulum, golgi	85.88	85.88
Os02t0735200-02	Rice	cytosol	84.75	84.27
KXG30808	Sorghum	cytosol	84.46	83.99
Bra039756.1-P	Field mustard	cytosol	84.18	83.71
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	83.9	83.43
VIT_01s0011g02200.t01	Wine grape	cytosol	83.9	83.43
TraesCS6A01G298100.2	Wheat	cytosol	83.9	83.43
Bra028132.1-P	Field mustard	cytosol	83.62	83.15
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	83.62	83.15
Bra018729.1-P	Field mustard	cytosol	82.2	82.67
Bra023573.1-P	Field mustard	cytosol	82.49	82.02
Bra008612.1-P	Field mustard	cytosol	82.2	81.74
Zm00001d017958_P002	Maize	cytosol	82.2	79.08
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	83.9	73.15
Solyc12g041870.1.1	Tomato	cytosol	72.32	71.31
Bra035392.1-P	Field mustard	plastid	75.14	62.15
Bra035529.1-P	Field mustard	plastid	74.86	61.92
Bra032257.1-P	Field mustard	cytosol	29.38	61.18

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	EnsemblPlantsGene:Bra021276	EnsemblPlants:Bra021276.1	EnsemblPlants:Bra021276.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N
InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651
UniProt:M4DXN0	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852
PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI00025453F9	SEG:seg

Description

AT3G17820 (E=6e-192) ATGSKB6, GLN1.3, GLN1;3 | ATGSKB6; copper ion binding / glutamate-ammonia ligase

Coordinates

chrA01:-:22858126..22859989

Molecular Weight (calculated)

38459.5 Da

IEP (calculated)

7.534

GRAVY (calculated)

-0.392

Length

354 amino acids

Sequence
(BLAST)

001: MSLLSDLVNL NLSDTTKQII AEYIWIGGSG MDIRSKARTL PGPVTDPSKL PKWNYDGSST GQAAGDDSEV ILYPQAIFRD PFRRGNNILV MCDAYTPAGN
101: PIPTNKRHNA AKIFSNSKVA SEEPWYGIEQ EYTLMQKGVN WPIGWPVGGF PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGISISGVN GEVMPGQWEF
201: QVGPVEGISA GDQVWIARFL LERITEISGV NVSFDPKPVP GDWNGAGAHC NYSTKTMRNT GGLAVIKKAI EKLQGKHKQH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFG DRRPASNMDP YVVTSMIAET TILG

Best Arabidopsis Sequence Match ( AT3G17820.1 )
(BLAST)

001: MSLLSDLVNL NLTDATGKII AEYIWIGGSG MDIRSKARTL PGPVTDPSKL PKWNYDGSST GQAAGEDSEV ILYPQAIFKD PFRKGNNILV MCDAYTPAGD
101: PIPTNKRHNA AKIFSHPDVA KEEPWYGIEQ EYTLMQKDVN WPIGWPVGGY PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGIGISGIN GEVMPGQWEF
201: QVGPVEGISS GDQVWVARYL LERITEISGV IVSFDPKPVP GDWNGAGAHC NYSTKTMRND GGLEVIKKAI GKLQLKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG

Arabidopsis Description

GLN1-3Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178VNQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.