Factsheet for Bra008612.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49656	Canola	cytosol	99.16	99.16
CDX69442	Canola	cytosol	98.6	98.6
AT5G16570.1	Thale cress	cytosol	96.35	96.35
Bra023573.1-P	Field mustard	cytosol	96.07	96.07
Bra039756.1-P	Field mustard	cytosol	88.2	88.2
Solyc11g011380.1.1	Tomato	extracellular	87.08	87.57
PGSC0003DMT400034421	Potato	cytosol	87.08	87.57
VIT_01s0011g02200.t01	Wine grape	cytosol	87.08	87.08
Solyc05g051250.2.1	Tomato	unclear	86.8	86.8
PGSC0003DMT400037822	Potato	cytosol	86.52	86.52
Bra028132.1-P	Field mustard	cytosol	86.24	86.24
KRH48674	Soybean	endoplasmic reticulum	85.96	85.96
KRH39031	Soybean	cytosol, nucleus	85.67	85.67
Bra022247.1-P	Field mustard	cytosol	83.71	84.18
Bra021276.1-P	Field mustard	cytosol	81.74	82.2
Bra018729.1-P	Field mustard	cytosol	78.65	79.55
Bra001686.1-P	Field mustard	endoplasmic reticulum, golgi	75.56	75.99
Bra035392.1-P	Field mustard	plastid	78.65	65.42
Bra035529.1-P	Field mustard	plastid	77.81	64.72
Bra032257.1-P	Field mustard	cytosol	29.21	61.18

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	EnsemblPlantsGene:Bra008612	EnsemblPlants:Bra008612.1	EnsemblPlants:Bra008612.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N
InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651
UniProt:M4CWL5	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852
PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI000254488C	SEG:seg

Description

AT5G16570 (E=5e-194) GLN1;4 | GLN1;4; glutamate-ammonia ligase

Coordinates

chrA10:+:13074359..13076933

Molecular Weight (calculated)

38902.9 Da

IEP (calculated)

5.277

GRAVY (calculated)

-0.401

Length

356 amino acids

Sequence
(BLAST)

001: MSALADLINL DLSDSTEKII AEYIWIGGSG LDMRSKARTL PGPVKDPSEL PKWNYDGSST GQAPGSDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPANKRHAA AKIFSDPSVA AEETWYGIEQ EYTLLQKDIK WPVGWPVGGF PGPQGPYYCG VGADKAFGRD IVDSHYKACL YAGINVSGTN GEVMPGQWEF
201: QVGPTVGIAA ADQVWVARYI LERITELAGV VLSLDPKPIP GDWNGAGAHT NYSTKSMRED GGYEVIKKAI EKLGLRHKEH ISAYGEGNER RLTGKHETAD
301: INTFVWGVAN RGASIRVGRD TEQAGKGYFE DRRPASNMDP YTVTSMIAET TILWKP

Best Arabidopsis Sequence Match ( AT5G16570.1 )
(BLAST)

001: MSSLADLINL DLSDSTDQII AEYIWIGGSG LDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGDDSEV IIYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKIFEDPSVV AEETWYGIEQ EYTLLQKDIK WPVGWPVGGF PGPQGPYYCG VGADKAFGRD IVDSHYKACL YAGINVSGTN GEVMPGQWEF
201: QVGPTVGIAA ADQVWVARYI LERITELAGV VLSLDPKPIP GDWNGAGAHT NYSTKSMRED GGYEVIKKAI EKLGLRHKEH IAAYGEGNER RLTGKHETAD
301: INTFLWGVAN RGASIRVGRD TEQAGKGYFE DRRPASNMDP YTVTSMIAES TILWKP

Arabidopsis Description

GLN1-4Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178UB24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.