Factsheet for Bra022247.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95818	Canola	cytosol	100.0	100.0
CDX92165	Canola	cytosol	100.0	100.0
Bra021276.1-P	Field mustard	cytosol	95.48	95.48
AT3G17820.1	Thale cress	cytosol	94.07	94.07
Bra001686.1-P	Field mustard	endoplasmic reticulum, golgi	87.85	87.85
Os02t0735200-02	Rice	cytosol	86.44	85.96
TraesCS6A01G298100.2	Wheat	cytosol	86.16	85.67
KXG30808	Sorghum	cytosol	86.16	85.67
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	85.88	85.39
VIT_01s0011g02200.t01	Wine grape	cytosol	85.31	84.83
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	85.03	84.55
Bra028132.1-P	Field mustard	cytosol	84.75	84.27
Bra039756.1-P	Field mustard	cytosol	84.75	84.27
Bra023573.1-P	Field mustard	cytosol	84.46	83.99
Bra008612.1-P	Field mustard	cytosol	84.18	83.71
Bra018729.1-P	Field mustard	cytosol	83.05	83.52
Zm00001d017958_P002	Maize	cytosol	83.9	80.71
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	86.16	75.12
Solyc12g041870.1.1	Tomato	cytosol	74.01	72.98
Bra032257.1-P	Field mustard	cytosol	30.51	63.53
Bra035392.1-P	Field mustard	plastid	75.99	62.85
Bra035529.1-P	Field mustard	plastid	75.42	62.38

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	EnsemblPlantsGene:Bra022247	EnsemblPlants:Bra022247.1	EnsemblPlants:Bra022247.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N
InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651
UniProt:M4E0F0	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852
PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI00019D33E4	SEG:seg

Description

AT3G17820 (E=1e-181) ATGSKB6, GLN1.3, GLN1;3 | ATGSKB6; copper ion binding / glutamate-ammonia ligase

Coordinates

chrA05:-:18857775..18862163

Molecular Weight (calculated)

38515.5 Da

IEP (calculated)

6.263

GRAVY (calculated)

-0.406

Length

354 amino acids

Sequence
(BLAST)

001: MSLLSDLVNL NLSDSTEKII AEYIWIGGSG MDIRSKARTL PGPVSDPSKL PKWNYDGSST GQAAGDDSEV ILYPQAIFRD PFRKGNNILV MCDAYTPAGN
101: PIPTNKRHNA AKIFSNPKVA SEEPWYGIEQ EYTLMQKGVN WPIGWPIGGF PGPQGPYYCG VGADKAIGRD IVDAHYKACI YAGIGISGVN GEVMPGQWEF
201: QVGPVEGISA GDQVWVARYL LERITEISGV NVSFDPKPVP GDWNGAGAHC NYSTKSMRND GGLAVIKKAI EKLQVKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG

Best Arabidopsis Sequence Match ( AT3G17820.1 )
(BLAST)

001: MSLLSDLVNL NLTDATGKII AEYIWIGGSG MDIRSKARTL PGPVTDPSKL PKWNYDGSST GQAAGEDSEV ILYPQAIFKD PFRKGNNILV MCDAYTPAGD
101: PIPTNKRHNA AKIFSHPDVA KEEPWYGIEQ EYTLMQKDVN WPIGWPVGGY PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGIGISGIN GEVMPGQWEF
201: QVGPVEGISS GDQVWVARYL LERITEISGV IVSFDPKPVP GDWNGAGAHC NYSTKTMRND GGLEVIKKAI GKLQLKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG

Arabidopsis Description

GLN1-3Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178VNQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.