Factsheet for TraesCS6B01G327500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid, cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G298100.2	Wheat	cytosol	99.72	99.72
Os02t0735200-02	Rice	cytosol	91.57	91.57
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	91.29	91.29
KXG30808	Sorghum	cytosol	90.73	90.73
Zm00001d017958_P002	Maize	cytosol	90.17	87.23
AT3G17820.1	Thale cress	cytosol	86.52	87.01
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	98.31	86.21
VIT_01s0011g02200.t01	Wine grape	cytosol	85.96	85.96
CDX92165	Canola	cytosol	85.39	85.88
CDX95818	Canola	cytosol	85.39	85.88
Bra022247.1-P	Field mustard	cytosol	85.39	85.88
KRH48674	Soybean	endoplasmic reticulum	85.67	85.67
KRH39031	Soybean	cytosol, nucleus	85.11	85.11
CDY68179	Canola	cytosol	83.43	83.9
CDY68590	Canola	cytosol	83.43	83.9
Bra021276.1-P	Field mustard	cytosol	83.15	83.62
TraesCS4B01G240900.1	Wheat	cytosol, golgi	81.18	81.64
CDX75942	Canola	cytosol	80.34	80.56
AT1G48470.1	Thale cress	cytosol	79.78	80.45
Bra018729.1-P	Field mustard	cytosol	79.21	80.11
CDX82343	Canola	cytosol	79.21	79.44
TraesCS4B01G047400.1	Wheat	cytosol, golgi	80.34	79.01
CDY49672	Canola	cytosol	79.21	78.99
CDX93671	Canola	cytosol	79.21	78.99
PGSC0003DMT400037457	Potato	cytosol, plastid	69.38	77.43
Bra001686.1-P	Field mustard	endoplasmic reticulum, golgi	76.69	77.12
Solyc12g041870.1.1	Tomato	cytosol	75.28	74.65
TraesCS2B01G528300.1	Wheat	plastid	75.0	63.12
Bra032257.1-P	Field mustard	cytosol	28.93	60.59
PGSC0003DMT400036605	Potato	cytosol	14.33	57.95
CDY27610	Canola	cytosol	32.87	55.98
CDY27650	Canola	mitochondrion	24.72	52.07
CDX98429	Canola	plastid	21.35	36.19

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp
InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	PFAM:PF00120
PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	SMART:SM01230
SUPFAM:SSF54368	SUPFAM:SSF55931	EnsemblPlantsGene:TraesCS6B01G327500	EnsemblPlants:TraesCS6B01G327500.1	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:577183956..577187605

Molecular Weight (calculated)

39215.4 Da

IEP (calculated)

5.276

GRAVY (calculated)

-0.394

Length

356 amino acids

Sequence
(BLAST)

001: MALLTDLLNL DLTDSTEKII AEYIWIGGSG MDLRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRKGNNILV MCDCYTPAGV
101: PIPTNKRYNA AKIFSNPDVA KEEPWYGIEQ EYTLLQKDIN WPLGWPVGGF PGPQGPYYCS IGADKSFGRD IVDSHYKACL FAGVNISGIN GEVMPGQWEF
201: QVGPTVGISA GDQVWVARYL LERITEIAGV VVTFDPKPIP GDWNGAGAHT NYSTESMRKD GGFKVIVDAV EKLKLKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRE TEQNGKGYFE DRRPASNMDP YVVTSMIAET TILWKP

Best Arabidopsis Sequence Match ( AT1G66200.1 )
(BLAST)

001: MSLLADLVNL DISDNSEKII AEYIWVGGSG MDMRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGQDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AEIFANPDVI AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS IGADKSFGRD IVDAHYKASL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEIWIARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMREE GGYEIIKKAI EKLGLRHKEH ISAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TLLWNP

Arabidopsis Description

ATGSR2Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:F4ID91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.