Factsheet for PGSC0003DMT400036605

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045640	Potato	cytosol, plastid	59.09	24.76
PGSC0003DMT400037457	Potato	cytosol, plastid	55.68	15.36
Os02t0735200-02	Rice	cytosol	60.23	14.89
KXG30808	Sorghum	cytosol	59.09	14.61
PGSC0003DMT400037822	Potato	cytosol	59.09	14.61
PGSC0003DMT400060733	Potato	cytosol	59.09	14.61
TraesCS6A01G298100.2	Wheat	cytosol	57.95	14.33
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	57.95	14.33
VIT_01s0011g02200.t01	Wine grape	cytosol	57.95	14.33
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	57.95	14.33
PGSC0003DMT400034421	Potato	cytosol	56.82	14.12
PGSC0003DMT400011133	Potato	cytosol	67.05	13.66
Zm00001d017958_P002	Maize	cytosol	54.55	13.04
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	57.95	12.56
Bra032257.1-P	Field mustard	cytosol	2.27	1.18

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	MapMan:35.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Gln_synt_N	InterPro:Gln_synth_N_conserv_site	InterPro:IPR036651
UniProt:M1B3W8	EnsemblPlantsGene:PGSC0003DMG400014115	PGSC:PGSC0003DMG400014115	EnsemblPlants:PGSC0003DMT400036605	ScanProsite:PS00180	PANTHER:PTHR20852
PANTHER:PTHR20852:SF53	SUPFAM:SSF54368	UniParc:UPI0002959856	SEG:seg	:	:

Description

Glutamine synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400014115]

Coordinates

chr00:+:33106334..33106736

Molecular Weight (calculated)

9763.3 Da

IEP (calculated)

4.911

GRAVY (calculated)

-0.552

Length

88 amino acids

Sequence
(BLAST)

1: QTISKPVKDA SELPKWNYDG SSAGQAPGED SEVILYPQAI FKDPFCGGNN ILVSCSDPVP PPTRTPVRFR HATLFSYWEN PSTQYQAF

Best Arabidopsis Sequence Match ( AT5G35630.1 )
(BLAST)

001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV

Arabidopsis Description

GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.