Factsheet for PGSC0003DMT400037822

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g051250.2.1	Tomato	unclear	97.75	97.75
PGSC0003DMT400034421	Potato	cytosol	89.04	89.55
CDX74573	Canola	cytosol	88.2	88.2
CDY01727	Canola	cytosol	85.96	87.68
AT5G37600.1	Thale cress	cytosol	87.36	87.36
Bra028132.1-P	Field mustard	cytosol	86.8	86.8
CDX69442	Canola	cytosol	86.8	86.8
CDY49656	Canola	cytosol	86.8	86.8
VIT_01s0011g02200.t01	Wine grape	cytosol	86.52	86.52
Bra008612.1-P	Field mustard	cytosol	86.52	86.52
PGSC0003DMT400060733	Potato	cytosol	86.24	86.24
CDY38104	Canola	cytosol	86.24	86.24
Bra023573.1-P	Field mustard	cytosol	85.96	85.96
CDX85499	Canola	cytosol	85.96	85.96
CDY16439	Canola	cytosol	85.39	85.39
CDY52941	Canola	cytosol	85.39	85.39
Bra039756.1-P	Field mustard	cytosol	85.39	85.39
AT5G16570.1	Thale cress	cytosol	85.11	85.11
AT1G66200.3	Thale cress	cytosol	84.55	82.47
PGSC0003DMT400037457	Potato	cytosol, plastid	70.51	78.68
PGSC0003DMT400011133	Potato	cytosol	77.25	63.66
PGSC0003DMT400036605	Potato	cytosol	14.61	59.09
PGSC0003DMT400045640	Potato	cytosol, plastid	15.73	26.67

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	EntrezGene:102596495	MapMan:25.1.5.1.1
Gene3D:3.10.20.70	Gene3D:3.30.590.40	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356
GO:GO:0005488	GO:GO:0005524	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	UniProt:M1B5Y6	PFAM:PF00120
PFAM:PF03951	EnsemblPlantsGene:PGSC0003DMG400014592	PGSC:PGSC0003DMG400014592	EnsemblPlants:PGSC0003DMT400037822	ScanProsite:PS00180	ScanProsite:PS00181
PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI000296E028
RefSeq:XP_006360384.1	:	:	:	:	:

Description

Glutamine synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400014592]

Coordinates

chr5:-:45890118..45894153

Molecular Weight (calculated)

38959.0 Da

IEP (calculated)

5.691

GRAVY (calculated)

-0.399

Length

356 amino acids

Sequence
(BLAST)

001: MSVISDLINL NLSECTKKII AEYIWIGGSG MDLRSKARTL SGPVKDPSEL PKWNYDGSST GQASGEDSEV ILHPQAIFKD PFRRGDNILV MCDAYTPAGD
101: PIPTNKRHNA AKIFSDPVVA AEEPWYGIEQ EYTLLQKEVN WPLGWPIGGF PGPQGPYYCG TGAANAFGRD IVDSHYKACL YAGINISGVN GEVMPGQWEF
201: QVGPAVGISA GDEVWTARYI LERIAEVAGV VVSFDPKPIP GDWNGAGAHA NYSTKSMRED GGYEIIKKAI EKLGLRHKEH IAAYGEGNER RLTGKHETAD
301: INSFKWGVAN RGCSVRVGRD TEKAGKGYFE DRRPASNMDP YIVTSMIAET TIVWKP

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.