Factsheet for PGSC0003DMT400045640

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036605	Potato	cytosol	24.76	59.09
KRH25519	Soybean	plastid	30.95	34.21
PGSC0003DMT400060733	Potato	cytosol	27.14	16.01
PGSC0003DMT400034421	Potato	cytosol	26.67	15.82
GSMUA_Achr9P17480_001	Banana	cytosol	26.67	15.73
PGSC0003DMT400037822	Potato	cytosol	26.67	15.73
PGSC0003DMT400011133	Potato	cytosol	31.9	15.51
Os04t0659100-01	Rice	plastid	30.95	15.19
TraesCS2B01G528300.1	Wheat	plastid	30.48	15.13
GSMUA_Achr3P09120_001	Banana	mitochondrion	29.05	15.1
PGSC0003DMT400037457	Potato	cytosol, plastid	22.86	15.05
TraesCS2A01G500400.1	Wheat	plastid	30.48	14.99
TraesCS2D01G500600.1	Wheat	plastid	30.48	14.99
KXG27313	Sorghum	plastid	30.48	14.78
VIT_07s0104g00610.t01	Wine grape	plastid	30.48	14.78
VIT_05s0020g02480.t01	Wine grape	plastid	30.0	14.58

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	MapMan:35.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Gln_synt_N	InterPro:IPR036651	UniProt:M1BHZ2
EnsemblPlantsGene:PGSC0003DMG400017703	PGSC:PGSC0003DMG400017703	EnsemblPlants:PGSC0003DMT400045640	PANTHER:PTHR20852	PANTHER:PTHR20852:SF53	SUPFAM:SSF54368
UniParc:UPI000295E48D	SEG:seg	:	:	:	:

Description

Glutamine synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400017703]

Coordinates

chr8:-:15153987..15158085

Molecular Weight (calculated)

23060.5 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.897

Length

210 amino acids

Sequence
(BLAST)

001: MRRKASSSSA QISHQQQCTA RTTTSVPPLF SHSGETAISF SSKQHRENDA APNGQHSPTS ASSLLRPATI SKPVKDVSEL PKWNYDGSST GQAPGEDSEV
101: IPYPQAIFKD PFRGGNNILL ESQFLQTNTI KLLKFLATQK LHLKFHGNIL PPCPASSDGS DQEGDENDKF DKESEGDEND KSDKESEGDE NGKSDKRVRV
201: MRSSCIYLTF

Best Arabidopsis Sequence Match ( AT5G35630.1 )
(BLAST)

001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV

Arabidopsis Description

GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.