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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
plastid: 23257241
plastid: 17189339
extracellular: 23159799
plastid: 27126603
plasma membrane: 27800704
extracellular: 28232208
gfp PMID: 23257241 doi
L Xu, C Carrie, SR Law, MW Murcha, J Whelan
Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
msms PMID: 27126603 doi
Y Wang, K Ji, S Shen, H Chen
Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G500600.1 Wheat plastid 90.65 90.87
TraesCS2A01G500400.1 Wheat plastid 90.65 90.87
TraesCS2B01G528300.1 Wheat plastid 89.72 90.78
KXG27313 Sorghum plastid 91.59 90.53
GSMUA_Achr9P17480_001 Banana cytosol 73.36 88.2
GSMUA_Achr3P09120_001 Banana mitochondrion 78.97 83.66
PGSC0003DMT400011133 Potato cytosol 81.31 80.56
VIT_07s0104g00610.t01 Wine grape plastid 81.31 80.37
VIT_05s0020g02480.t01 Wine grape plastid 80.37 79.63
Solyc01g080280.2.1 Tomato plastid 80.37 79.63
Bra035392.1-P Field mustard plastid 78.74 78.74
CDX74644 Canola plastid 78.74 78.74
Bra035529.1-P Field mustard plastid 78.27 78.27
Os02t0735200-02 Rice cytosol 64.95 78.09
AT5G35630.1 Thale cress plastid 78.04 77.67
CDY49365 Canola plastid 71.5 77.67
Os03t0223400-01 Rice cytosol, plasma membrane 64.72 77.59
Os03t0712800-02 Rice cytosol, plastid 62.38 72.16
CDX84116 Canola plastid 40.65 70.45
CDY33684 Canola plastid 78.74 68.92
KRH25519 Soybean plastid 21.73 48.95
PGSC0003DMT400045640 Potato cytosol, plastid 15.19 30.95
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2MapMan:25.1.5.1.2Gene3D:3.10.20.70
Gene3D:3.30.590.40EntrezGene:4337272ProteinID:AAL87183.1EMBL:AK063706ProteinID:BAF16047.1ProteinID:BAS91430.1
ProteinID:BAS91431.1ProteinID:CAE02885.2ProteinID:CAE54574.1ProteinID:EEE61834.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004356GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005576
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005829GO:GO:0005840
GO:GO:0006542GO:GO:0006807GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009628
GO:GO:0009651GO:GO:0009719GO:GO:0009735GO:GO:0009941GO:GO:0009987GO:GO:0016020
GO:GO:0016874GO:GO:0022626GO:GO:0046686GO:GO:0048046InterPro:Gln_synt_NInterPro:Gln_synt_b-grasp
InterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_N_conserv_siteInterPro:Gln_synth_cat_domInterPro:Gln_synth_gly_rich_siteInterPro:IPR036651EnsemblPlantsGene:Os04g0659100
EnsemblPlants:Os04t0659100-01UniProt:P14655PFAM:PF00120PFAM:PF03951ScanProsite:PS00180ScanProsite:PS00181
PANTHER:PTHR20852PANTHER:PTHR20852:SF53SMART:SM01230SUPFAM:SSF54368SUPFAM:SSF55931UniParc:UPI000012B6B3
EMBL:X14246RefSeq:XP_015635322.1RefSeq:XP_015635323.1SEG:seg::
Description
GRAIN SIZE 2Glutamine synthetase shoot isozyme, chloroplast precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS31). (Os04t0659100-01);Similar to Isoform 2 of Glutamine synthetase, chloroplastic. (Os04t0659100-02);Glutamine synthetase shoot isozyme, chloroplast precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS31). (Os04t0659100-03)
Coordinates
chr4:-:33624428..33631025
Molecular Weight (calculated)
46645.3 Da
IEP (calculated)
6.271
GRAVY (calculated)
-0.313
Length
428 amino acids
Sequence
(BLAST)
001: MAQAVVPAMQ CQVGAVRARP AAAAAAAGGR VWGVRRTGRG TSGFRVMAVS TETTGVVTRM EQLLNMDTTP FTDKIIAEYI WVGGTGIDLR SKSRTISKPV
101: EDPSELPKWN YDGSSTGQAP GEDSEVILYP QAIFKDPFRG GNNILVMCDT YTPAGEPIPT NKRNRAAQVF SDPKVVSQVP WFGIEQEYTL LQRDVNWPLG
201: WPVGGYPGPQ GPYYCAVGSD KSFGRDISDA HYKACLYAGI NISGTNGEVM PGQWEYQVGP SVGIEAGDHI WISRYILERI TEQAGVVLTL DPKPIQGDWN
301: GAGCHTNYST KSMREDGGFE VIKKAILNLS LRHDLHISAY GEGNERRLTG LHETASIDNF SWGVANRGCS IRVGRDTEAK GKGYLEDRRP ASNMDPYVVT
401: ALLAETTILW EPTLEAEVLA AKKLALKV
Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)
001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV
Arabidopsis Description
GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.