Factsheet for TraesCS2A01G500400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 19643044
plastid: 22160430
plastid: 22736107
plastid: 23683508
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19643044 doi

DY Hou, H Xu, GY Du, JT Lin, M Duan, AG Guo

College of Life Science, Northwest A&F University, Yangling, Shaanxi 712100, P. R. China.

msms PMID: 23683508 doi

ZH He, HW Li, Y Shen, ZS Li, H Mi

National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35630.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT5G35630.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT5G35630.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT5G35630.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT5G35630.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT5G35630.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G500600.1	Wheat	plastid	100.0	100.0
TraesCS2B01G528300.1	Wheat	plastid	98.59	99.53
Os04t0659100-01	Rice	plastid	90.87	90.65
KXG27313	Sorghum	plastid	87.82	86.61
GSMUA_Achr9P17480_001	Banana	cytosol	71.9	86.24
GSMUA_Achr3P09120_001	Banana	mitochondrion	77.05	81.44
VIT_07s0104g00610.t01	Wine grape	plastid	80.33	79.21
PGSC0003DMT400011133	Potato	cytosol	79.39	78.47
Solyc01g080280.2.1	Tomato	plastid	78.92	78.01
VIT_05s0020g02480.t01	Wine grape	plastid	78.45	77.55
CDX74644	Canola	plastid	77.52	77.34
Bra035529.1-P	Field mustard	plastid	77.52	77.34
Bra035392.1-P	Field mustard	plastid	77.52	77.34
AT5G35630.1	Thale cress	plastid	77.52	76.98
TraesCS6A01G298100.2	Wheat	cytosol	63.47	76.12
CDY49365	Canola	plastid	70.02	75.89
TraesCS4A01G063800.1	Wheat	cytosol	62.53	75.42
TraesCS4A01G266900.1	Wheat	cytosol	60.42	71.27
CDX84116	Canola	plastid	40.52	70.04
CDY33684	Canola	plastid	77.52	67.69
KRH25519	Soybean	plastid	22.25	50.0
PGSC0003DMT400045640	Potato	cytosol, plastid	14.99	30.48

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.2	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0005840
GO:GO:0006542	GO:GO:0006807	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628
GO:GO:0009651	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020
GO:GO:0022626	GO:GO:0046686	GO:GO:0048046	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	PFAM:PF00120	PFAM:PF03951
ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF53	SMART:SM01230	SUPFAM:SSF54368
SUPFAM:SSF55931	EnsemblPlantsGene:TraesCS2A01G500400	EnsemblPlants:TraesCS2A01G500400.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2A:+:729293649..729297303

Molecular Weight (calculated)

46705.4 Da

IEP (calculated)

5.951

GRAVY (calculated)

-0.338

Length

427 amino acids

Sequence
(BLAST)

001: MAQAVVPAMQ CQVGVRGRSA VPARQPAGRV WGVRRTARAT SGFKVLALGP ETTGVIQRMQ QLLDMDTTPF TDKIIAEYIW VGGSGIDLRS KSRTISKPVE
101: DPSELPKWNY DGSSTGQAPG EDSEVILYPQ AIFKDPFRGG NNILVICDTY TPQGEPIPTN KRHMAAQIFS DPKVTAQVPW FGIEQEYTLM QRDVNWPLGW
201: PVGGYPGPQG PYYCAVGSDK SFGRDISDAH YKACLYAGIE ISGTNGEVMP GQWEYQVGPS VGIDAGDHIW ASRYILERIT EQAGVVLTLD PKPIQGDWNG
301: AGCHTNYSTL SMREDGGFDV IKKAILNLSL RHDLHIAAYG EGNERRLTGL HETASISDFS WGVANRGCSI RVGRETEAKG KGYLEDRRPA SNMDPYTVTA
401: LLAETTILWE PTLEAEALAA KKLALKV

Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)

001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV

Arabidopsis Description

GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.