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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G35630.1 CDY32970 AT5G42980.1 15352244
AT5G35630.1 CDY43592 AT5G42980.1 15352244
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra035392.1-P Field mustard plastid 87.53 100.0
CDX74644 Canola plastid 87.53 100.0
CDY49365 Canola plastid 78.73 97.72
CDX84116 Canola plastid 48.26 95.55
AT5G35630.1 Thale cress plastid 81.39 92.56
GSMUA_Achr9P17480_001 Banana cytosol 63.39 87.08
Solyc01g080280.2.1 Tomato plastid 75.46 85.42
PGSC0003DMT400011133 Potato cytosol 75.26 85.19
VIT_07s0104g00610.t01 Wine grape plastid 73.62 83.14
VIT_05s0020g02480.t01 Wine grape plastid 73.42 83.1
GSMUA_Achr3P09120_001 Banana mitochondrion 67.28 81.44
CDY52941 Canola cytosol 57.67 79.21
CDY16439 Canola cytosol 57.67 79.21
CDY49656 Canola cytosol 57.46 78.93
Os04t0659100-01 Rice plastid 68.92 78.74
CDX69442 Canola cytosol 57.06 78.37
CDY38104 Canola cytosol 57.06 78.37
CDX74573 Canola cytosol 57.06 78.37
CDX85499 Canola cytosol 56.85 78.09
CDY01727 Canola cytosol 55.42 77.65
TraesCS2B01G528300.1 Wheat plastid 67.08 77.54
TraesCS2D01G500600.1 Wheat plastid 67.69 77.52
TraesCS2A01G500400.1 Wheat plastid 67.69 77.52
KXG27313 Sorghum plastid 68.3 77.14
CDX92165 Canola cytosol 55.01 75.99
CDX95818 Canola cytosol 55.01 75.99
CDY68590 Canola cytosol 54.6 75.42
CDY68179 Canola cytosol 54.6 75.42
CDX75942 Canola cytosol 51.74 71.27
CDX93671 Canola cytosol 51.74 70.87
CDY49672 Canola cytosol 51.74 70.87
CDX82343 Canola cytosol 51.33 70.7
CDY27610 Canola cytosol 22.7 53.11
KRH25519 Soybean plastid 20.04 51.58
CDY27650 Canola mitochondrion 17.59 50.89
CDX98429 Canola plastid 14.31 33.33
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2MapMan:25.1.5.1.2Gene3D:3.10.20.70
Gene3D:3.30.590.40GO:A0A078H865UniProt:A0A078H865EnsemblPlants:CDY33684ProteinID:CDY33684ProteinID:CDY33684.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004356GO:GO:0005488GO:GO:0005524
GO:GO:0006542GO:GO:0006807GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016874EnsemblPlantsGene:GSBRNA2T00055061001InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_N_conserv_site
InterPro:Gln_synth_cat_domInterPro:Gln_synth_gly_rich_siteInterPro:IPR036651PFAM:PF00120PFAM:PF03951ScanProsite:PS00180
ScanProsite:PS00181PANTHER:PTHR20852PANTHER:PTHR20852:SF53MetaCyc:PWY-381MetaCyc:PWY-5675MetaCyc:PWY-6549
MetaCyc:PWY-6963MetaCyc:PWY-6964SMART:SM01230SUPFAM:SSF54368SUPFAM:SSF55931UniParc:UPI0004EE5ADA
SEG:seg:::::
Description
BnaC04g29670DGlutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A078H865]
Coordinates
chrLK032320:-:54094..57393
Molecular Weight (calculated)
54480.8 Da
IEP (calculated)
7.154
GRAVY (calculated)
-0.331
Length
489 amino acids
Sequence
(BLAST)
001: MYMFTSIMYV STRVYIQDLI HCSFSFIFVN SSFAICCKHS SLLKSELESS SSSRYFLWIK MAQILAASPT CQMRLTKPSS IASSKLWNSV VLKQKKQSSS
101: SKVRSFKVMA LQSDNSTINR VESLLNLDTK PFTDRIIAEY IWIGGSGIDL RSKSRTLEKP VEDPSELPKW NYDGSSTGQA PGEDSEVILY PQAIFRDPFR
201: GGNNILVICD TYTPAGEPIP TNKRARAAEI FSNKKVNEEI PWFGIEQEYT LLQPNVNWPL GWPVGAYPGP QGPYYCGVGA EKSWGRDISD AHYKACLYAG
301: INISGTNGEV MPGQWEFQVG PSVGIEAGDH VWCARYLLER ITEQAGVVLT LDPKPIEGDW NGAGCHTNYS TKSMREDGGF EVIKKAILNL SLRHMEHISA
401: YGEGNERRLT GKHETASIDQ FSWGVANRGC SIRVGRDTEK KGKGYLEDRR PASNMDPYIV TSLLAETTLL WEPTLEAEAL AAQKLSLKV
Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)
001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV
Arabidopsis Description
GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.