CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27650	Canola	mitochondrion	27.14	33.73
CDY27610	Canola	cytosol	28.1	28.23
CDY68179	Canola	cytosol	40.48	24.01
CDY68590	Canola	cytosol	40.48	24.01
CDX95818	Canola	cytosol	39.52	23.45
CDX92165	Canola	cytosol	39.52	23.45
Os02t0735200-02	Rice	cytosol	39.52	23.31
AT3G17820.1	Thale cress	cytosol	38.57	22.88
KXG30808	Sorghum	cytosol	38.1	22.47
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	37.14	21.91
CDX84116	Canola	plastid	25.71	21.86
CDX82343	Canola	cytosol	36.67	21.69
CDY49656	Canola	cytosol	36.67	21.63
Zm00001d017958_P002	Maize	cytosol	37.62	21.47
CDX75942	Canola	cytosol	36.19	21.41
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	36.19	21.35
CDX69442	Canola	cytosol	36.19	21.35
CDY16439	Canola	cytosol	36.19	21.35
CDX74573	Canola	cytosol	36.19	21.35
CDY52941	Canola	cytosol	35.71	21.07
TraesCS6A01G298100.2	Wheat	cytosol	35.71	21.07
VIT_01s0011g02200.t01	Wine grape	cytosol	35.71	21.07
CDY01727	Canola	cytosol	34.76	20.92
CDY38104	Canola	cytosol	35.24	20.79
CDX85499	Canola	cytosol	35.24	20.79
Solyc12g041870.1.1	Tomato	cytosol	34.29	20.06
CDY49672	Canola	cytosol	32.86	19.33
CDX93671	Canola	cytosol	32.86	19.33
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	36.19	18.72
CDY49365	Canola	plastid	32.38	17.26
CDX74644	Canola	plastid	33.33	16.36
CDY33684	Canola	plastid	33.33	14.31

Protein Annotations

EnsemblPlants:CDX98429	EnsemblPlantsGene:GSBRNA2T00106031001	Gene3D:3.30.590.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356
GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	ProteinID:CDX98429	ProteinID:CDX98429.1	SEG:seg	UniParc:UPI0004EE6227
MapMan:35.1	:	:	:	:	:

Description

BnaC05g39460D

Coordinates

chrLK031905:-:40759..42036

Molecular Weight (calculated)

23712.8 Da

IEP (calculated)

8.785

GRAVY (calculated)

0.007

Length

210 amino acids

Sequence
(BLAST)

001: MIFSFEDSGP FASLPLLSSI TYTQAKCLLS SDFSSALSFP PCYTRKHIKT HTMRSHIMNF GNNILVMCDA YMPAGNPIPT NKRHNAAKIF SSSKVASEEP
101: WYGIEQEYTL MQKGVNWKLI IVSIMSSSNI IQTTILISFL WISLLFGYRV LPLDNAEDLT MPTISKLQLR VLSVTSWLAE QFRQRTQVSG DDTKVLMELK
201: YGKVEANLNP

Best Arabidopsis Sequence Match ( AT3G17820.1 )
(BLAST)

001: MSLLSDLVNL NLTDATGKII AEYIWIGGSG MDIRSKARTL PGPVTDPSKL PKWNYDGSST GQAAGEDSEV ILYPQAIFKD PFRKGNNILV MCDAYTPAGD
101: PIPTNKRHNA AKIFSHPDVA KEEPWYGIEQ EYTLMQKDVN WPIGWPVGGY PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGIGISGIN GEVMPGQWEF
201: QVGPVEGISS GDQVWVARYL LERITEISGV IVSFDPKPVP GDWNGAGAHC NYSTKTMRND GGLEVIKKAI GKLQLKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG

Arabidopsis Description

GLN1-3Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178VNQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.