Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48470.1 | CDX74573 | AT5G37600.1 | 21798944 |
| AT1G48470.1 | CDY01727 | AT5G37600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018729.1-P | Field mustard | cytosol | 98.6 | 100.0 |
| CDX93671 | Canola | cytosol | 99.72 | 99.72 |
| AT1G48470.1 | Thale cress | cytosol | 93.56 | 94.62 |
| CDX95818 | Canola | cytosol | 82.35 | 83.05 |
| CDX92165 | Canola | cytosol | 82.35 | 83.05 |
| CDY68179 | Canola | cytosol | 82.07 | 82.77 |
| CDY68590 | Canola | cytosol | 82.07 | 82.77 |
| CDX74573 | Canola | cytosol | 80.11 | 80.34 |
| CDX75942 | Canola | cytosol | 79.55 | 80.0 |
| CDY01727 | Canola | cytosol | 78.15 | 79.94 |
| VIT_01s0011g02200.t01 | Wine grape | cytosol | 79.55 | 79.78 |
| CDX82343 | Canola | cytosol | 78.99 | 79.44 |
| TraesCS6A01G298100.2 | Wheat | cytosol | 78.99 | 79.21 |
| TraesCS6B01G327500.1 | Wheat | cytosol, golgi, plastid, unclear | 78.99 | 79.21 |
| Os02t0735200-02 | Rice | cytosol | 78.99 | 79.21 |
| CDY52941 | Canola | cytosol | 78.99 | 79.21 |
| CDY38104 | Canola | cytosol | 78.71 | 78.93 |
| CDY49656 | Canola | cytosol | 78.71 | 78.93 |
| Zm00001d051804_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 78.43 | 78.65 |
| KXG30808 | Sorghum | cytosol | 78.43 | 78.65 |
| CDY16439 | Canola | cytosol | 78.43 | 78.65 |
| CDX85499 | Canola | cytosol | 78.43 | 78.65 |
| CDX69442 | Canola | cytosol | 78.15 | 78.37 |
| Zm00001d017958_P002 | Maize | cytosol | 77.03 | 74.73 |
| Solyc12g041870.1.1 | Tomato | cytosol | 72.55 | 72.14 |
| HORVU6Hr1G074030.2 | Barley | cytosol, mitochondrion, plastid | 78.99 | 69.46 |
| CDY49365 | Canola | plastid | 66.95 | 60.66 |
| CDX74644 | Canola | plastid | 70.87 | 59.11 |
| CDX84116 | Canola | plastid | 39.78 | 57.49 |
| CDY33684 | Canola | plastid | 70.87 | 51.74 |
| CDY27610 | Canola | cytosol | 30.25 | 51.67 |
| CDY27650 | Canola | mitochondrion | 23.25 | 49.11 |
| CDX98429 | Canola | plastid | 19.33 | 32.86 |
Protein Annotations
| KEGG:00220+6.3.1.2 | KEGG:00250+6.3.1.2 | KEGG:00630+6.3.1.2 | KEGG:00910+6.3.1.2 | MapMan:25.1.5.1.1 | Gene3D:3.10.20.70 |
| Gene3D:3.30.590.40 | GO:A0A078IIA5 | UniProt:A0A078IIA5 | EnsemblPlants:CDY49672 | ProteinID:CDY49672 | ProteinID:CDY49672.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004356 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0006542 | GO:GO:0006807 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016874 | EnsemblPlantsGene:GSBRNA2T00093552001 | InterPro:Gln_synt_N | InterPro:Gln_synt_b-grasp | InterPro:Gln_synth/guanido_kin_cat_dom | InterPro:Gln_synth_N_conserv_site |
| InterPro:Gln_synth_cat_dom | InterPro:Gln_synth_gly_rich_site | InterPro:IPR036651 | PFAM:PF00120 | PFAM:PF03951 | ScanProsite:PS00180 |
| ScanProsite:PS00181 | PANTHER:PTHR20852 | PANTHER:PTHR20852:SF58 | MetaCyc:PWY-381 | MetaCyc:PWY-5675 | MetaCyc:PWY-6549 |
| MetaCyc:PWY-6963 | MetaCyc:PWY-6964 | SMART:SM01230 | SUPFAM:SSF54368 | SUPFAM:SSF55931 | UniParc:UPI0004EB9CD3 |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g02010DGlutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A078IIA5]
Coordinates
chrLK032851:+:99302..101882
Molecular Weight (calculated)
39337.7 Da
IEP (calculated)
6.635
GRAVY (calculated)
-0.473
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: METERMSPLS DLLNLNLDTK QIIAEYIWIG GSGMDIRSKG RTLPGPVSDP SKLPKWNYDG SSTNQAAGDD SEVILYPQAI FKDPFRKGNN ILVMCDAYTP
101: KGDPIPTNNR HKAVKIFDHP NVKAEEPWFG IEQEYTLLKK DVKWPLGWPL GGFPGPQGPY YCAVGADKAF GRDIVDGHYK ACLYAGLSIG GANGEVMPGQ
201: WEFQISPTVG IGAGDQLWVA RYILERITEI CGVIVSFDPK PIEGDWNGAA AHTNFSTKSM RKEGGLDLIK KAIGKLEVKH KQHIAAYGEG NERRLTGKHE
301: TADINKFSWG VADRGASVRV GRDTEKEGKG YFEDRRPSSN MDPYLVTSMI AETTILG
101: KGDPIPTNNR HKAVKIFDHP NVKAEEPWFG IEQEYTLLKK DVKWPLGWPL GGFPGPQGPY YCAVGADKAF GRDIVDGHYK ACLYAGLSIG GANGEVMPGQ
201: WEFQISPTVG IGAGDQLWVA RYILERITEI CGVIVSFDPK PIEGDWNGAA AHTNFSTKSM RKEGGLDLIK KAIGKLEVKH KQHIAAYGEG NERRLTGKHE
301: TADINKFSWG VADRGASVRV GRDTEKEGKG YFEDRRPSSN MDPYLVTSMI AETTILG
001: MTSPLSDLLN LDLSDTKKII AEYIWIGGSG MDIRSKARTL PGPVSNPTKL PKWNYDGSST DQAAGDDSEV ILYPQAIFKD PFRKGNNILV MCDAYRPAGD
101: PIPTNNRHKA VKIFDHPNVK AEEPWFGIEQ EYTLLKKDVK WPLGWPLGGF PGPQGPYYCA VGADKAFGRD IVDAHYKACL YSGLSIGGAN GEVMPGQWEF
201: QISPTVGIGA GDQLWVARYI LERITEICGV IVSFDPKPIQ GDWNGAAAHT NFSTKSMRKD GGLDLIKEAI KKLEVKHKQH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAD RGASVRVGRD TEKEGKGYFE DRRPSSNMDP YLVTSMIAET TIL
101: PIPTNNRHKA VKIFDHPNVK AEEPWFGIEQ EYTLLKKDVK WPLGWPLGGF PGPQGPYYCA VGADKAFGRD IVDAHYKACL YSGLSIGGAN GEVMPGQWEF
201: QISPTVGIGA GDQLWVARYI LERITEICGV IVSFDPKPIQ GDWNGAAAHT NFSTKSMRKD GGLDLIKEAI KKLEVKHKQH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAD RGASVRVGRD TEKEGKGYFE DRRPSSNMDP YLVTSMIAET TIL
Arabidopsis Description
GLN1-5Glutamine synthetase cytosolic isozyme 1-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXW5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.