CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35630.1	CDY32970	AT5G42980.1	15352244
AT5G35630.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49365	Canola	plastid	97.57	61.17
Bra035529.1-P	Field mustard	plastid	97.17	56.07
CDX74644	Canola	plastid	95.55	55.14
AT5G35630.1	Thale cress	plastid	86.64	49.77
KRH25519	Soybean	plastid	37.65	48.95
CDY33684	Canola	plastid	95.55	48.26
Solyc01g080280.2.1	Tomato	plastid	79.76	45.6
PGSC0003DMT400011133	Potato	cytosol	79.35	45.37
CDY27650	Canola	mitochondrion	30.77	44.97
GSMUA_Achr9P17480_001	Banana	cytosol	64.78	44.94
CDY16439	Canola	cytosol	63.16	43.82
VIT_05s0020g02480.t01	Wine grape	plastid	76.52	43.75
CDY01727	Canola	cytosol	61.54	43.55
CDX74573	Canola	cytosol	62.75	43.54
CDY52941	Canola	cytosol	62.75	43.54
GSMUA_Achr3P09120_001	Banana	mitochondrion	70.85	43.32
CDY68179	Canola	cytosol	61.94	43.22
CDY68590	Canola	cytosol	61.94	43.22
VIT_07s0104g00610.t01	Wine grape	plastid	75.71	43.19
CDY49656	Canola	cytosol	61.54	42.7
CDX95818	Canola	cytosol	61.13	42.66
CDX92165	Canola	cytosol	61.13	42.66
CDX69442	Canola	cytosol	61.13	42.42
CDY38104	Canola	cytosol	61.13	42.42
CDX85499	Canola	cytosol	61.13	42.42
CDX75942	Canola	cytosol	59.92	41.69
CDX82343	Canola	cytosol	59.92	41.69
TraesCS2B01G528300.1	Wheat	plastid	70.04	40.9
Os04t0659100-01	Rice	plastid	70.45	40.65
KXG27313	Sorghum	plastid	71.26	40.65
TraesCS2A01G500400.1	Wheat	plastid	70.04	40.52
TraesCS2D01G500600.1	Wheat	plastid	70.04	40.52
CDX93671	Canola	cytosol	57.49	39.78
CDY49672	Canola	cytosol	57.49	39.78
CDY27610	Canola	cytosol	33.6	39.71
CDX98429	Canola	plastid	21.86	25.71

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.2	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:A0A078D434	EnsemblPlants:CDX84116	ProteinID:CDX84116	ProteinID:CDX84116.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00140115001	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_N_conserv_site	InterPro:IPR036651	PFAM:PF03951	ScanProsite:PS00180	PANTHER:PTHR20852	PANTHER:PTHR20852:SF53
MetaCyc:PWY-381	MetaCyc:PWY-5675	MetaCyc:PWY-6549	MetaCyc:PWY-6963	MetaCyc:PWY-6964	SUPFAM:SSF54368
SUPFAM:SSF55931	UniParc:UPI0004EEA58F	:	:	:	:

Description

BnaC08g07930D

Coordinates

chrLK031835:-:1755848..1757793

Molecular Weight (calculated)

27395.4 Da

IEP (calculated)

8.003

GRAVY (calculated)

-0.488

Length

247 amino acids

Sequence
(BLAST)

001: MKLTKPSPIA SSKLWSSVML KQKKQNSSKL RSFKAMALQS DNSTINRVES LLNLDTKPFT DRIIAEYIWI GGSGIDLRSK SRTLEKPVED PSELPKWNYD
101: GSSTGQAPGE DSEVILYPQA IFRDPFRGGN NILVICDTYT PAGEPIPTNK RARAAEIFSN KKVNEEIPWF GIEQEYTLLQ PNVNWPLGWP VGAYPGPQGP
201: YYCGVGAEKS WGRDISDAHY KACLYAGINI SGTNGEVMPG QVSFFPQ

Best Arabidopsis Sequence Match ( AT1G66200.2 )
(BLAST)

001: MSLLADLVNL DISDNSEKII AEYIWVGGSG MDMRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGQDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AEIFANPDVI AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS IGADKSFGRD IVDAHYKASL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEIWIARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYRDTLRIGG QLQTWTLTLL LP

Arabidopsis Description

ATGSR2Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:F4ID91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.