Factsheet for VIT_05s0020g02480.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P17480_001	Banana	cytosol	75.23	91.29
VIT_07s0104g00610.t01	Wine grape	plastid	87.27	87.07
GSMUA_Achr3P09120_001	Banana	mitochondrion	80.56	86.14
Solyc01g080280.2.1	Tomato	plastid	84.72	84.72
PGSC0003DMT400011133	Potato	cytosol	84.49	84.49
Bra035392.1-P	Field mustard	plastid	83.1	83.88
CDX74644	Canola	plastid	83.1	83.88
Bra035529.1-P	Field mustard	plastid	82.18	82.94
AT5G35630.1	Thale cress	plastid	82.41	82.79
CDY49365	Canola	plastid	74.77	81.98
Os04t0659100-01	Rice	plastid	79.63	80.37
KXG27313	Sorghum	plastid	80.09	79.91
VIT_14s0006g00350.t01	Wine grape	cytosol	65.28	79.21
TraesCS2A01G500400.1	Wheat	plastid	77.55	78.45
TraesCS2D01G500600.1	Wheat	plastid	77.55	78.45
TraesCS2B01G528300.1	Wheat	plastid	76.62	78.25
VIT_01s0011g02200.t01	Wine grape	cytosol	64.35	78.09
CDX84116	Canola	plastid	43.75	76.52
CDY33684	Canola	plastid	83.1	73.42
VIT_17s0000g01910.t01	Wine grape	cytosol	61.11	69.66
VIT_10s0042g01000.t01	Wine grape	cytosol	7.18	57.41
PGSC0003DMT400045640	Potato	cytosol, plastid	14.58	30.0

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	EntrezGene:100261413	wikigene:100261413
MapMan:25.1.5.1.2	Gene3D:3.10.20.70	Gene3D:3.30.590.40	ProteinID:CBI26165	ProteinID:CBI26165.3	UniProt:D7T6P4
EMBL:FN595749	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488
GO:GO:0005524	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site
InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	EntrezGene:LOC100261413	wikigene:LOC100261413	PFAM:PF00120
PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF53	SMART:SM01230
SUPFAM:SSF54368	SUPFAM:SSF55931	TIGR:TC60677	UniParc:UPI00015C8096	ArrayExpress:VIT_05s0020g02480	EnsemblPlantsGene:VIT_05s0020g02480
EnsemblPlants:VIT_05s0020g02480.t01	unigene:Vvi.1208	RefSeq:XP_002279497	RefSeq:XP_002279497.1	SEG:seg	:

Description

Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:D7T6P4]

Coordinates

chr5:-:4134992..4139324

Molecular Weight (calculated)

47916.8 Da

IEP (calculated)

7.792

GRAVY (calculated)

-0.489

Length

432 amino acids

Sequence
(BLAST)

001: MAQILAPSTQ WQMRMTKNPA NASPFTTKMW GSLFLKQKTK GTAKFSTKFR VCASKSESST VNRLDDLLNM DIRPYTDKII AEYVWIGGTG IDLRSKSRTI
101: SKPVEHPSEL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRGGNNILV ICDSYTPAGE PIPTNKRHRA AEIFGNKKVI DEVPWFGIEQ EYTLLQPNVK
201: WPLGWPVGAY PGPQGPYYCA AGADKSFGRD ISDAHYKACL YAGINISGTN GEVMPGQWEY QVGPSVGIEA GDHIWCSRYI LERITEQAGV VLTLDPKPIE
301: GDWNGAGCHT NYSTKSMRED GGYELIKKAI LNLSLRHKEH ISAYGEGNER RLTGKHETAN INTFSWGVAN RGCSVRVGRD TEKQGKGYLE DRRPASNMDP
401: YIVTSLLAET TILWEPTLEA EALAAQKLAL KV

Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)

001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV

Arabidopsis Description

GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.