Factsheet for VIT_17s0000g01910.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g00350.t01	Wine grape	cytosol	81.79	87.08
VIT_01s0011g02200.t01	Wine grape	cytosol	78.1	83.15
GSMUA_Achr3P14170_001	Banana	cytosol	14.51	71.43
VIT_07s0104g00610.t01	Wine grape	plastid	71.77	62.82
VIT_05s0020g02480.t01	Wine grape	plastid	69.66	61.11
VIT_10s0042g01000.t01	Wine grape	cytosol	8.18	57.41
GSMUA_Achr3P14160_001	Banana	plastid	16.62	44.06

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	Gene3D:3.30.590.40
MapMan:50.6.3	ProteinID:CCB43307	ProteinID:CCB43307.1	UniProt:F6GSQ2	EMBL:FN594950	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874
InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site
InterPro:IPR036651	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852
PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI00021094DA	ArrayExpress:VIT_17s0000g01910
EnsemblPlantsGene:VIT_17s0000g01910	EnsemblPlants:VIT_17s0000g01910.t01	:	:	:	:

Description

Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:F6GSQ2]

Coordinates

chr17:-:1487856..1491378

Molecular Weight (calculated)

41671.7 Da

IEP (calculated)

6.731

GRAVY (calculated)

-0.280

Length

379 amino acids

Sequence
(BLAST)

001: MALLSDLINL NLSETTEKVI VEYIWVGGSG MDLRSKARTL SGPVSDPAKL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDTYTPAGE
101: PIPTNKRCNA AKIFSHPDVA AEVPWYGIEQ EYTLLQKEVK WPIGWPVGGF PGPQGPYYCG IGADKAWGRD IVDAHYKACL YAGINISGIN GEVMPGQWEY
201: QVGPSVGISA GDELWVSRYI LERITEIAGV VLSFDPKPIQ GDWNGAGAHT NYSTKSMRND GGFEVIKKAI EKLGLRHKEH IAAYGEGNER RLTGRHETAD
301: INTFLWGVAN RGASIRVGRD TEKKACFKHG SLCGHLHDCR NYHPLEAIRH PSPPSQQACG IVLLEFPVKI VSLELLVLV

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.