Factsheet for VIT_14s0006g00350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97948	Soybean	cytosol, endoplasmic reticulum, nucleus	92.13	92.13
VIT_01s0011g02200.t01	Wine grape	cytosol	91.57	91.57
GSMUA_Achr3P20250_001	Banana	cytosol, plasma membrane	90.73	90.73
KRH17323	Soybean	cytosol	90.45	90.45
KRH30929	Soybean	endoplasmic reticulum	90.45	90.45
KRH72976	Soybean	cytosol	90.45	90.45
GSMUA_AchrUn_...	Banana	cytosol	89.89	89.89
GSMUA_Achr3P07420_001	Banana	cytosol, plasma membrane	89.61	89.61
GSMUA_Achr8P30880_001	Banana	cytosol	89.61	89.36
GSMUA_Achr1P22290_001	Banana	cytosol	87.92	87.68
OQU92979	Sorghum	cytosol	87.64	87.39
Os03t0223400-01	Rice	cytosol, plasma membrane	85.67	85.43
TraesCS4A01G063800.1	Wheat	cytosol	83.99	84.46
TraesCS4D01G240700.1	Wheat	cytosol	83.71	84.18
TraesCS4B01G240900.1	Wheat	cytosol, golgi	83.71	84.18
OQU91109	Sorghum	cytosol	86.24	83.65
Zm00001d033747_P001	Maize	cytosol, extracellular	86.52	83.47
TraesCS4D01G047400.1	Wheat	cytosol	84.27	82.87
VIT_17s0000g01910.t01	Wine grape	cytosol	87.08	81.79
HORVU4Hr1G007610.1	Barley	cytosol	83.15	81.77
TraesCS4B01G047400.1	Wheat	cytosol, golgi	82.87	81.49
TraesCS4A01G266900.1	Wheat	cytosol	82.02	80.66
Os03t0712800-02	Rice	cytosol, plastid	82.87	79.73
KRH72975	Soybean	cytosol	56.46	79.45
HORVU4Hr1G066860.5	Barley	plasma membrane	84.27	78.33
Zm00001d048050_P004	Maize	cytosol	73.88	76.23
Zm00001d028260_P005	Maize	cytosol	82.02	74.68
KRH17322	Soybean	cytosol	47.19	66.67
VIT_07s0104g00610.t01	Wine grape	plastid	80.9	66.51
VIT_05s0020g02480.t01	Wine grape	plastid	79.21	65.28
VIT_10s0042g01000.t01	Wine grape	cytosol	9.27	61.11

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	EntrezGene:100246404	wikigene:100246404
EntrezGene:100266191	wikigene:100266191	MapMan:25.1.5.1.1	Gene3D:3.10.20.70	Gene3D:3.30.590.40	EMBL:AM466583
ProteinID:CAA63981	ProteinID:CAA63981.1	ProteinID:CAA63982	ProteinID:CAA63982.1	ProteinID:CAN68162	ProteinID:CAN68162.1
ProteinID:CBI33470	ProteinID:CBI33470.3	UniProt:D7TSJ8	EMBL:FN596245	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	EntrezGene:GS
wikigene:GS	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom
InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181
PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	TIGR:TC64127
UniParc:UPI00015CB4E6	ArrayExpress:VIT_14s0006g00350	EnsemblPlantsGene:VIT_14s0006g00350	EnsemblPlants:VIT_14s0006g00350.t01	unigene:Vvi.121	unigene:Vvi.13775
EMBL:X94320	EMBL:X94321	SEG:seg	:	:	:

Description

Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:D7TSJ8]

Coordinates

chr14:+:13742299..13745590

Molecular Weight (calculated)

39310.5 Da

IEP (calculated)

5.891

GRAVY (calculated)

-0.412

Length

356 amino acids

Sequence
(BLAST)

001: MALLSDLINL NLSDVTEKII AEYIWIGGSG MDLRSKARTL SGPVSDPHKL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHNA AKIFSHPDVL AEETWYGIEQ EYTLLQNSVK WPIGWPVGGY PGPQGPYYCG IGADKAFGRD IVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA GDELWVARYI LERITEIAGV VVSFDPKPIQ GDWNGAGAHT NYSTKSMRND GGYEIIKKAI EKLGLRHKEH IAAYGEGNER RLTGRHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILWKP

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.