CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30929	Soybean	endoplasmic reticulum	96.35	96.35
VIT_14s0006g00350.t01	Wine grape	cytosol	92.13	92.13
GSMUA_Achr3P20250_001	Banana	cytosol, plasma membrane	90.17	90.17
KRH48674	Soybean	endoplasmic reticulum	90.17	90.17
KRH39031	Soybean	cytosol, nucleus	90.17	90.17
KRH72976	Soybean	cytosol	89.89	89.89
GSMUA_AchrUn_...	Banana	cytosol	89.61	89.61
KRH17323	Soybean	cytosol	89.61	89.61
GSMUA_Achr3P07420_001	Banana	cytosol, plasma membrane	89.04	89.04
GSMUA_Achr8P30880_001	Banana	cytosol	87.08	86.83
GSMUA_Achr1P22290_001	Banana	cytosol	86.8	86.55
OQU92979	Sorghum	cytosol	86.24	85.99
Os03t0223400-01	Rice	cytosol, plasma membrane	84.55	84.31
TraesCS4B01G240900.1	Wheat	cytosol, golgi	82.87	83.33
TraesCS4A01G063800.1	Wheat	cytosol	82.58	83.05
TraesCS4D01G240700.1	Wheat	cytosol	82.3	82.77
TraesCS4D01G047400.1	Wheat	cytosol	83.99	82.6
HORVU4Hr1G007610.1	Barley	cytosol	83.71	82.32
OQU91109	Sorghum	cytosol	84.83	82.29
Zm00001d033747_P001	Maize	cytosol, extracellular	85.11	82.11
TraesCS4B01G047400.1	Wheat	cytosol, golgi	83.15	81.77
TraesCS4A01G266900.1	Wheat	cytosol	83.15	81.77
KRH12677	Soybean	extracellular	28.09	80.65
Os03t0712800-02	Rice	cytosol, plastid	83.43	80.27
KRH72975	Soybean	cytosol	55.9	78.66
HORVU4Hr1G066860.5	Barley	plasma membrane	82.87	77.02
Zm00001d048050_P004	Maize	cytosol	73.88	76.23
Zm00001d028260_P005	Maize	cytosol	81.46	74.17
KRH17322	Soybean	cytosol	48.88	69.05
KRH71070	Soybean	extracellular	17.42	64.58
KRH20936	Soybean	plastid	78.37	64.58
KRH11349	Soybean	plastid	78.37	64.58
KRH25519	Soybean	plastid	20.22	37.89

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	UniProt:A0A0R0EVM7	EMBL:ACUP02010832	EnsemblPlantsGene:GLYMA_18G041100	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N
InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651
EnsemblPlants:KRG97948	ProteinID:KRG97948	ProteinID:KRG97948.1	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180
ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	MetaCyc:PWY-381	MetaCyc:PWY-5675	MetaCyc:PWY-6549
MetaCyc:PWY-6963	MetaCyc:PWY-6964	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI00019D33EF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:3470598..3474961

Molecular Weight (calculated)

39143.1 Da

IEP (calculated)

5.452

GRAVY (calculated)

-0.425

Length

356 amino acids

Sequence
(BLAST)

001: MSLLSDLINL NLSDTTEKVI AEYIWIGGSG MDLRSKARTL PGPVSDPSKL PKWNYDGSST GQAPGEDSEV IIYPQAIFRD PFRRGNNILV ICDTYTPAGE
101: PIPTNKRHDA AKVFSHPDVV AEETWYGIEQ EYTLLQKDIQ WPLGWPVGGF PGPQGPYYCG VGADKAFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA GDEVWAARYI LERITEIAGV VVSFDPKPIQ GDWNGAGAHT NYSTKSMRND GGYEVIKTAI EKLGKRHKEH IAAYGEGNER RLTGRHETAD
301: INTFLWGVAN RGASVRVGRD TEKAGKGYFE DRRPASNMDP YVVTSMIADT TILWKP

Best Arabidopsis Sequence Match ( AT5G16570.1 )
(BLAST)

001: MSSLADLINL DLSDSTDQII AEYIWIGGSG LDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGDDSEV IIYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKIFEDPSVV AEETWYGIEQ EYTLLQKDIK WPVGWPVGGF PGPQGPYYCG VGADKAFGRD IVDSHYKACL YAGINVSGTN GEVMPGQWEF
201: QVGPTVGIAA ADQVWVARYI LERITELAGV VLSLDPKPIP GDWNGAGAHT NYSTKSMRED GGYEVIKKAI EKLGLRHKEH IAAYGEGNER RLTGKHETAD
301: INTFLWGVAN RGASIRVGRD TEQAGKGYFE DRRPASNMDP YTVTSMIAES TILWKP

Arabidopsis Description

GLN1-4Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178UB24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.