Factsheet for Zm00001d033747_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91109	Sorghum	cytosol	96.21	96.73
TraesCS4B01G047400.1	Wheat	cytosol, golgi	86.18	87.85
TraesCS4D01G047400.1	Wheat	cytosol	85.64	87.29
Os03t0712800-02	Rice	cytosol, plastid	87.26	87.03
HORVU4Hr1G007610.1	Barley	cytosol	85.37	87.02
TraesCS4A01G266900.1	Wheat	cytosol	85.09	86.74
VIT_14s0006g00350.t01	Wine grape	cytosol	83.47	86.52
GSMUA_Achr8P30880_001	Banana	cytosol	83.47	86.27
GSMUA_Achr1P22290_001	Banana	cytosol	82.66	85.43
KRG97948	Soybean	cytosol, endoplasmic reticulum, nucleus	82.11	85.11
KRH30929	Soybean	endoplasmic reticulum	81.57	84.55
KRH17323	Soybean	cytosol	81.57	84.55
KRH72976	Soybean	cytosol	81.03	83.99
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	81.03	83.99
Zm00001d017958_P002	Maize	cytosol	81.03	81.25
Zm00001d048050_P004	Maize	cytosol	69.38	74.2
KRH72975	Soybean	cytosol	50.41	73.52
Zm00001d028260_P005	Maize	cytosol	75.61	71.36
KRH17322	Soybean	cytosol	42.55	62.3

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	EntrezGene:542400	UniProt:B8A3M0	EMBL:BT056162	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	ProteinID:ONM08531.1	PFAM:PF00120
PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF58	SMART:SM01230
SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI0001917581	EnsemblPlantsGene:Zm00001d033747	EnsemblPlants:Zm00001d033747_P001	EnsemblPlants:Zm00001d033747_T001
SEG:seg	:	:	:	:	:

Description

glutamine synthetase2Glutamine synthetase root isozyme 2

Coordinates

chr1:-:272704775..272707957

Molecular Weight (calculated)

40204.4 Da

IEP (calculated)

6.115

GRAVY (calculated)

-0.453

Length

369 amino acids

Sequence
(BLAST)

001: MALLSDLINL DLSGRTGKII AEYIWVGGSG MDVRSKARTL SGPVDDPSKL PKWNFDGSST GQAPGDDSEV ILCPRAIFRD PFRKGQNILV MCDCYEPNGE
101: PIPSNKRHGA AKIFSHPDVK AEEPWFGIEQ EYTLLQKDTK WPLGWPLGGY PGPQGPYYCA VGADKSYGRD IVDAHYKACL YAGIDISGIN GEVMPGQWEF
201: QVGPAVGVSA GDQLWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMRSD GGYEVIKKAI GKLGLRHREH IAAYGDGNER RLTGRHETAD
301: INTFVWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSLIAET TMLWEPSHSN GDGKGAAAP

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.