Factsheet for TraesCS4B01G047400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G047400.1	Wheat	cytosol	97.79	97.79
HORVU4Hr1G007610.1	Barley	cytosol	96.96	96.96
TraesCS4A01G266900.1	Wheat	cytosol	96.69	96.69
OQU91109	Sorghum	cytosol	87.57	86.38
Zm00001d033747_P001	Maize	cytosol, extracellular	87.85	86.18
Os03t0712800-02	Rice	cytosol, plastid	87.02	85.14
KRG97948	Soybean	cytosol, endoplasmic reticulum, nucleus	81.77	83.15
KRH17323	Soybean	cytosol	81.49	82.87
VIT_14s0006g00350.t01	Wine grape	cytosol	81.49	82.87
KRH30929	Soybean	endoplasmic reticulum	81.22	82.58
GSMUA_Achr8P30880_001	Banana	cytosol	80.66	81.79
KRH72976	Soybean	cytosol	80.39	81.74
GSMUA_Achr1P22290_001	Banana	cytosol	80.11	81.23
TraesCS4B01G240900.1	Wheat	cytosol, golgi	78.73	80.51
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	79.01	80.34
KRH72975	Soybean	cytosol	50.28	71.94
KRH17322	Soybean	cytosol	43.37	62.3
TraesCS2B01G528300.1	Wheat	plastid	70.72	60.52

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp
InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	PFAM:PF00120
PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF58	SMART:SM01230
SUPFAM:SSF54368	SUPFAM:SSF55931	EnsemblPlantsGene:TraesCS4B01G047400	EnsemblPlants:TraesCS4B01G047400.1	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:34722476..34725118

Molecular Weight (calculated)

39469.6 Da

IEP (calculated)

5.729

GRAVY (calculated)

-0.416

Length

362 amino acids

Sequence
(BLAST)

001: MSPLADLLSL DLSGCTGKII AEYIWVGGTG MDVRSKARTL PGPVDDPSKL PKWNFDGSST GQATGDDSEV ILCPQAIFRD PFRKGNNILV ICDCYAPNGE
101: PIPSNKRYNA ARIFGHPEVK AEEPWYGIEQ EYTLLQKDTN WPIGWPLGGY PGPQGPYYCA AGAEKSYGRD IVDAHYKACL YAGINIGGIN AEVMPGQWEF
201: QVGPSVGISA GDELWAARYI LERITEIAGV VVSFDPKPIP GEWNGAGAHT NYSTKSMRSE GGYEVIKKAI KKLEARHMEH IAAYGEGNER RLTGRHETAD
301: INTFVWGVAN RGASVRVGRD TEKEGKGYFE DRRPGSNMDP YVVTSLIAET TILCKAGLSN GK

Best Arabidopsis Sequence Match ( AT1G66200.1 )
(BLAST)

001: MSLLADLVNL DISDNSEKII AEYIWVGGSG MDMRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGQDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AEIFANPDVI AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS IGADKSFGRD IVDAHYKASL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEIWIARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMREE GGYEIIKKAI EKLGLRHKEH ISAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TLLWNP

Arabidopsis Description

ATGSR2Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:F4ID91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.