Factsheet for TraesCS4B01G240900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G240700.1	Wheat	cytosol	99.15	99.15
TraesCS4A01G063800.1	Wheat	cytosol	99.15	99.15
HORVU4Hr1G066860.5	Barley	plasma membrane	97.46	90.08
OQU92979	Sorghum	cytosol	89.55	88.8
Os03t0223400-01	Rice	cytosol, plasma membrane	88.98	88.24
GSMUA_Achr3P20250_001	Banana	cytosol, plasma membrane	85.03	84.55
GSMUA_AchrUn_...	Banana	cytosol	85.03	84.55
GSMUA_Achr3P07420_001	Banana	cytosol, plasma membrane	84.18	83.71
VIT_14s0006g00350.t01	Wine grape	cytosol	84.18	83.71
KRH17323	Soybean	cytosol	83.33	82.87
KRG97948	Soybean	cytosol, endoplasmic reticulum, nucleus	83.33	82.87
KRH30929	Soybean	endoplasmic reticulum	82.2	81.74
KRH72976	Soybean	cytosol	82.2	81.74
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	81.64	81.18
TraesCS4B01G047400.1	Wheat	cytosol, golgi	80.51	78.73
Zm00001d048050_P004	Maize	cytosol	75.14	77.1
Zm00001d028260_P005	Maize	cytosol	83.62	75.7
KRH72975	Soybean	cytosol	52.82	73.91
KRH17322	Soybean	cytosol	44.92	63.1
TraesCS2B01G528300.1	Wheat	plastid	74.29	62.17

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp
InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	PFAM:PF00120
PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF78	SMART:SM01230
SUPFAM:SSF54368	SUPFAM:SSF55931	EnsemblPlantsGene:TraesCS4B01G240900	EnsemblPlants:TraesCS4B01G240900.1	SEG:seg	:

Description

No Description!

Coordinates

chr4B:+:499898784..499901496

Molecular Weight (calculated)

38731.7 Da

IEP (calculated)

5.249

GRAVY (calculated)

-0.366

Length

354 amino acids

Sequence
(BLAST)

001: MASLADLVNL DLSDCTDKII VEYLWVGGSG IDIRSKARTV NGPITDASQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGDNLLV MCDCYTPQGV
101: PIPTNKRHNA AKIFNTPKVA AEETWYGIEQ EYTLLQKDVN WPLGWPIGGY PGPQGPYYCA AGADKAFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPSVGIAA SDQLWVARYI LERITEVAGV VLSLDPKPIP GDWNGAGAHT NYSTKSMREA GGYEVIKTAI EKLGKRHAQH IAAYGEGNER RLTGHHETAD
301: INTFKWGVAD RGASVRVGRD TEKDGKGYFE DRRPASNMDP YVVTSMIAET TLLL

Best Arabidopsis Sequence Match ( AT5G16570.1 )
(BLAST)

001: MSSLADLINL DLSDSTDQII AEYIWIGGSG LDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGDDSEV IIYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKIFEDPSVV AEETWYGIEQ EYTLLQKDIK WPVGWPVGGF PGPQGPYYCG VGADKAFGRD IVDSHYKACL YAGINVSGTN GEVMPGQWEF
201: QVGPTVGIAA ADQVWVARYI LERITELAGV VLSLDPKPIP GDWNGAGAHT NYSTKSMRED GGYEVIKKAI EKLGLRHKEH IAAYGEGNER RLTGKHETAD
301: INTFLWGVAN RGASIRVGRD TEQAGKGYFE DRRPASNMDP YTVTSMIAES TILWKP

Arabidopsis Description

GLN1-4Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178UB24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.